Os07g0580900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GGDP synthase.
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Os07g0580900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GGDP synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.05 | 0.373 | 12.1 | 0.192 | 1.73 | 0.888 | -0.127 | -0.845 | -0.279 | 21.1 | 18.97 | 2643 | -- | -- |
| 63.7 | 0.372 | 12.1 | 0.2 | 1.73 | 1.25 | -0.201 | -- | -0.268 | 21 | 18.4 | 3813 | -- | -- |
| 62.28 | 0.368 | 12.1 | 0.173 | 1.71 | 0.962 | -- | -0.856 | -0.305 | 21.1 | 18.3 | 2682 | -- | -- |
| 62.74 | 0.369 | 12.1 | 0.116 | 1.71 | 1.24 | -- | -- | -0.3 | 21.1 | 18.36 | 2672 | -- | -- |
| 227.35 | 0.702 | 12.1 | 0.187 | -- | 1.33 | -- | -0.709 | -0.292 | -- | 17.9 | 2979 | -- | -- |
| 82.84 | 0.427 | 12.2 | -0.427 | 1.72 | -- | -0.135 | -- | -0.517 | 20.9 | -- | -- | -- | -- |
| 82.9 | 0.426 | 12.2 | -0.423 | 1.72 | -- | -- | -- | -0.517 | 20.9 | -- | -- | -- | -- |
| 227.47 | 0.702 | 12.1 | 0.184 | -- | 1.63 | -- | -- | -0.29 | -- | 17.97 | 2975 | -- | -- |
| 62.97 | 0.37 | 12.2 | -- | 1.71 | 1.23 | -- | -- | -0.331 | 21.1 | 18.1 | 2680 | -- | -- |
| 252.21 | 0.742 | 12.1 | -0.422 | -- | -- | -- | -- | -0.528 | -- | -- | -- | -- | -- |
| 87.61 | 0.438 | 12.2 | -- | 1.72 | -- | -- | -- | -0.47 | 20.9 | -- | -- | -- | -- |
| 227.8 | 0.703 | 12.1 | -- | -- | 1.44 | -- | -- | -0.332 | -- | 18 | 2972 | -- | -- |
| 256.9 | 0.748 | 12.1 | -- | -- | -- | -- | -- | -0.481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 2 | 62.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 3 | 62.99 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 6 | 63.13 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 20 | 63.56 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 8 |
| 67 | 64.00 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 86 | 64.09 | temperature | 20 | 4320 | < th | dose dependent | sin | 13 | NA |
| 94 | 64.13 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 129 | 64.32 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 315 | 65.00 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 319 | 65.01 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 343 | 65.10 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 346 | 65.14 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 361 | 65.19 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 364 | 65.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 368 | 65.23 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 465 | 65.69 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 466 | 65.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 467 | 65.70 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 471 | 65.72 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 472 | 65.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 476 | 65.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 477 | 65.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 479 | 65.74 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 488 | 65.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 490 | 65.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 491 | 65.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 540 | 65.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 554 | 65.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 571 | 65.89 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 591 | 65.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 592 | 65.91 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 595 | 65.92 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 618 | 65.94 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 619 | 65.94 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 631 | 65.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 17 |
| 636 | 65.95 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 20 |
| 639 | 65.96 | humidity | 60 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 646 | 65.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 22 |
| 649 | 65.96 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 714 | 66.03 | humidity | 50 | 43200 | > th | dose independent | sin | 9 | NA |
| 725 | 66.04 | humidity | 50 | 43200 | < th | dose independent | sin | 9 | NA |
| 796 | 66.09 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 806 | 66.10 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 858 | 66.13 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 23 |
| 870 | 66.14 | humidity | 60 | 43200 | < th | dose dependent | sin | 10 | NA |
| 874 | 66.14 | humidity | 50 | 43200 | < th | dose dependent | rect. | 19 | 20 |
| 897 | 66.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 898 | 66.16 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 899 | 66.16 | humidity | 50 | 43200 | < th | dose dependent | sin | 8 | NA |
| 941 | 66.19 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 949 | 66.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 955 | 66.19 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 968 | 66.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 971 | 66.21 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 986 | 66.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 8 |