BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0580900 Os07g0580900|AK121529
(366 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0580900 Similar to GGDP synthase 608 e-174
Os01g0248701 Polyprenyl synthetase family protein 295 3e-80
Os02g0668100 Polyprenyl synthetase family protein 150 2e-36
Os05g0235700 131 6e-31
Os12g0271700 Similar to Solanesyl diphosphate synthase 1 114 1e-25
AK066579 114 2e-25
>Os07g0580900 Similar to GGDP synthase
Length = 366
Score = 608 bits (1569), Expect = e-174, Method: Compositional matrix adjust.
Identities = 311/366 (84%), Positives = 311/366 (84%)
Query: 1 MAAFPPLAASRVRISPLIPXXXXXXXXXXXXXXXXQHRRRFCXXXXXXXXXXXXXXXXXX 60
MAAFPPLAASRVRISPLIP QHRRRFC
Sbjct: 1 MAAFPPLAASRVRISPLIPAAAMAGTAGAAAASYAQHRRRFCAIVATAAASPVPAAAAAA 60
Query: 61 XXGFDFNAYMGEKAAAVNRALDASIPADEPPAALHEAMRYALLAGGKRVRPALCLAACAV 120
GFDFNAYMGEKAAAVNRALDASIPADEPPAALHEAMRYALLAGGKRVRPALCLAACAV
Sbjct: 61 ATGFDFNAYMGEKAAAVNRALDASIPADEPPAALHEAMRYALLAGGKRVRPALCLAACAV 120
Query: 121 VGGREXXXXXXXXXVEMVHTMSLVHXXXXXXXXXXLRRGKPTCHVVYGEPIAVLTGDALL 180
VGGRE VEMVHTMSLVH LRRGKPTCHVVYGEPIAVLTGDALL
Sbjct: 121 VGGREAWAMPAAAAVEMVHTMSLVHDDLPCMDDDDLRRGKPTCHVVYGEPIAVLTGDALL 180
Query: 181 SLSFHHMARFDSYPPDIDADKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGSTETVP 240
SLSFHHMARFDSYPPDIDADKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGSTETVP
Sbjct: 181 SLSFHHMARFDSYPPDIDADKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGSTETVP 240
Query: 241 LERLEYIHLHKTAALLEASVVIGAILGGGSDEQIESLRMYARSIGLLFQVVDDILDVTKS 300
LERLEYIHLHKTAALLEASVVIGAILGGGSDEQIESLRMYARSIGLLFQVVDDILDVTKS
Sbjct: 241 LERLEYIHLHKTAALLEASVVIGAILGGGSDEQIESLRMYARSIGLLFQVVDDILDVTKS 300
Query: 301 SEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKLLSDAREQLSGFDQETAAPLLHLANY 360
SEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKLLSDAREQLSGFDQETAAPLLHLANY
Sbjct: 301 SEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKLLSDAREQLSGFDQETAAPLLHLANY 360
Query: 361 IAYRQN 366
IAYRQN
Sbjct: 361 IAYRQN 366
>Os01g0248701 Polyprenyl synthetase family protein
Length = 376
Score = 295 bits (755), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 206/306 (67%), Gaps = 14/306 (4%)
Query: 64 FDFNAYMGEKAAAVNRALDASIPADEPPAALHEAMRYALLAGGKRVRPALCLAACAVVGG 123
FDF Y+ +A AV+ ALD ++P P L E+MRY++LAGGKRVRP L LAAC +VGG
Sbjct: 82 FDFQRYLSARADAVHDALDRAMPRGFPER-LCESMRYSVLAGGKRVRPVLALAACELVGG 140
Query: 124 REXXXXXXXXXVEMVHTMSLVHXXXXXXXXXXLRRGKPTCHVVYGEPIAVLTGDALLSLS 183
VEM+HTMSL+H LRRG+P+ HV +GE A+L GDAL +L+
Sbjct: 141 DAAAATPVACAVEMIHTMSLIHDDMPCMDDDALRRGRPSNHVAFGEFTALLAGDALHALA 200
Query: 184 FHHMARF---DSYPPDIDADKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGSTETVP 240
F H+AR P D R +RA+ EL G+ G+ AGQV D E G V
Sbjct: 201 FEHVARGCGDHGVPAD--------RTLRAVAELGSASGTGGVAAGQVADKESEGLP--VS 250
Query: 241 LERLEYIHLHKTAALLEASVVIGAILGGGSDEQIESLRMYARSIGLLFQVVDDILDVTKS 300
L LEYIH+HKTA LLEA+ V GAI+GGG+D ++E +R YAR +GLLFQVVDD+LD+T +
Sbjct: 251 LAMLEYIHVHKTARLLEAAAVSGAIVGGGADAEVERVRRYARCVGLLFQVVDDVLDMTST 310
Query: 301 SEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKLLSDAREQLSGFDQETAAPLLHLANY 360
SE+LGKTAGKD+ +DK TYPKLLG++K+RE+A LL+ A +L GFD E AAPL HLA +
Sbjct: 311 SEQLGKTAGKDVEADKATYPKLLGVDKAREYAADLLAMAEAELDGFDAERAAPLRHLARF 370
Query: 361 IAYRQN 366
IAYRQ+
Sbjct: 371 IAYRQH 376
>Os02g0668100 Polyprenyl synthetase family protein
Length = 349
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 156/306 (50%), Gaps = 24/306 (7%)
Query: 64 FDFNAYMGEKAAAVNRALDASIPADEPPAALHEAMRYALLAGG------KRVRPALCLAA 117
FD Y A V LDA++P P +H AMRYA+L G KR P LC+AA
Sbjct: 47 FDLRLYWTSLIADVEAELDAAMPI-RTPERIHSAMRYAVLPGAGNEGTAKRAPPVLCVAA 105
Query: 118 CAVVGGREXXXXXXXXXVEMVHTMSLVHXXXXXXXXXXLRRGKPTCHVVYGEPIAVLTGD 177
C ++G +EM+H SLVH RRG+P+ H YG +AVL GD
Sbjct: 106 CELLGAPREAALPAAVALEMLHAASLVHDDLPCFDAAPTRRGRPSTHAAYGTDMAVLAGD 165
Query: 178 ALLSLSFHHMARFDSYPPDIDADKHPARVVRAIGELARCIGSEGLVAGQVVDLEMTGSTE 237
AL L++ H+ ++ P D H A ++R +GELAR +GS G+ AGQ +DL G+T
Sbjct: 166 ALFPLAYTHVI---AHTPSPDPVPH-AVLLRVLGELARAVGSTGMAAGQFLDL--AGATA 219
Query: 238 TVPLERLEYIHLHKTAALLEASVVIGAILGGGSDEQIESLRMYARSIGLLFQVVDDILDV 297
E ++ + K + E S GA+LGG ++ +LR Y R+IG+L+Q+VDDI
Sbjct: 220 LGEAEVMKVL-TKKFGEMAECSAACGAMLGGAGPDEEAALRRYGRTIGVLYQLVDDI--- 275
Query: 298 TKSSEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKLLSDAREQLSGFDQETAAPLLHL 357
+S+ GK + + LG++++ E+L + A+ + F + +L L
Sbjct: 276 -RSASGNGKM------RSNASVLRALGMDRALGIVEELKAQAKMEADRFGDKYGERVLPL 328
Query: 358 ANYIAY 363
+++ Y
Sbjct: 329 YSFVDY 334
>Os05g0235700
Length = 251
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/77 (87%), Positives = 70/77 (90%), Gaps = 1/77 (1%)
Query: 288 FQVVDDILDVTKSSEELGKTAGKDLASDKTTYPKLLGLEKSREFAEKLLSDAREQL-SGF 346
++VDDILDVT SS+ELGKTAGKDLASDKT YPKLLGLEKSR FAEKLLSDAREQL SGF
Sbjct: 54 MRIVDDILDVTMSSDELGKTAGKDLASDKTIYPKLLGLEKSRGFAEKLLSDAREQLFSGF 113
Query: 347 DQETAAPLLHLANYIAY 363
DQE AAPLLHLANYI Y
Sbjct: 114 DQEKAAPLLHLANYITY 130
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/41 (87%), Positives = 41/41 (100%)
Query: 289 QVVDDILDVTKSSEELGKTAGKDLASDKTTYPKLLGLEKSR 329
++VDDI+DVTKSSEE+GKTAG+DLASDKTTYPKLLGLEKSR
Sbjct: 138 RIVDDIIDVTKSSEEVGKTAGEDLASDKTTYPKLLGLEKSR 178
>Os12g0271700 Similar to Solanesyl diphosphate synthase 1
Length = 372
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 139/288 (48%), Gaps = 34/288 (11%)
Query: 77 VNRALDASIPADEPPAALHEAMRYALLAGGKRVRPALCL----AACAVVGGREXXX--XX 130
+N L + + A+ P L A AGGKR+RPAL A + G E
Sbjct: 64 LNNNLKSLVGAENP--VLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQR 121
Query: 131 XXXXVEMVHTMSLVHXXXXXXXXXXLRRGKPTCHVVYGEPIAVLTGDALLSLSFHHMARF 190
+EM+HT SL+H +RRGK T H +YG +AVL GD + + S +A
Sbjct: 122 LAEIIEMIHTASLIHDDVIDDSG--MRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANL 179
Query: 191 DSYPPDIDADKHPARVVR--AIGELARCIGSEGLVAGQVVDLEMTGSTETVPLERLEYIH 248
+ +I+ K ++V++ A GE+ + A + D ++T L+
Sbjct: 180 E----NIEVIKLISQVIKDFASGEIKQ--------ASTLFDCDIT-------LDDYLLKS 220
Query: 249 LHKTAALLEASVVIGAILGGGSDEQIESLRMYARSIGLLFQVVDDILDVTKSSEELGKTA 308
+KTA+L+ AS AI G S E + Y R++GL FQVVDDILD T+S+E+LGK A
Sbjct: 221 YYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPA 280
Query: 309 GKDLASDKTTYPKLLGLEKSREFAEKLLSDAREQLSGFDQETAAPLLH 356
G DLA T P + L+ + E + S+ E S TA L+H
Sbjct: 281 GSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNS---LATAIELVH 325
>AK066579
Length = 403
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 136/282 (48%), Gaps = 34/282 (12%)
Query: 77 VNRALDASIPADEPPAALHEAMRYALLAGGKRVRPALCL----AACAVVGGREXXX--XX 130
+N L + + A+ P L A AGGKR+RPAL A + G E
Sbjct: 95 LNNNLKSLVGAENP--VLVSAAEQIFGAGGKRLRPALVFLVSRATAELAGLLELTTEHQR 152
Query: 131 XXXXVEMVHTMSLVHXXXXXXXXXXLRRGKPTCHVVYGEPIAVLTGDALLSLSFHHMARF 190
+EM+HT SL+H +RRGK T H +YG +AVL GD + + S +A
Sbjct: 153 LAEIIEMIHTASLIHDDVIDDSG--MRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLANL 210
Query: 191 DSYPPDIDADKHPARVVR--AIGELARCIGSEGLVAGQVVDLEMTGSTETVPLERLEYIH 248
+ +I+ K ++V++ A GE+ + A + D ++T L+
Sbjct: 211 E----NIEVIKLISQVIKDFASGEIKQ--------ASTLFDCDVT-------LDDYLLKS 251
Query: 249 LHKTAALLEASVVIGAILGGGSDEQIESLRMYARSIGLLFQVVDDILDVTKSSEELGKTA 308
+KTA+LL +S AI G S E + Y R++GL FQVVDDILD T+S+E+LGK A
Sbjct: 252 YYKTASLLASSTRSAAIFSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPA 311
Query: 309 GKDLASDKTTYPKLLGLE---KSREFAEKLLSDAREQLSGFD 347
G DLA T P + L+ K RE + S++ + D
Sbjct: 312 GSDLAKGNLTAPVIFALQDEPKLREIIDSEFSESDSLATAID 353
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,612,668
Number of extensions: 398783
Number of successful extensions: 1084
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1067
Number of HSP's successfully gapped: 8
Length of query: 366
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 264
Effective length of database: 11,709,973
Effective search space: 3091432872
Effective search space used: 3091432872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)