Os02g0668100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Polyprenyl synthetase family protein.
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Os02g0668100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Polyprenyl synthetase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.65 | 0.281 | 12 | 0.199 | 0.489 | 0.62 | -0.326 | 1.31 | -0.411 | 19.2 | 25.13 | 31 | -- | -- |
| 36.31 | 0.283 | 12 | 0.056 | 0.506 | 0.744 | -0.287 | -- | -0.44 | 19.4 | 25.49 | 29 | -- | -- |
| 35.89 | 0.281 | 12 | 0.203 | 0.509 | 0.611 | -- | 1.24 | -0.412 | 19.2 | 25.18 | 29 | -- | -- |
| 36.5 | 0.281 | 12 | 0.0607 | 0.492 | 0.734 | -- | -- | -0.447 | 19.2 | 25.32 | 24 | -- | -- |
| 44.31 | 0.31 | 12 | 0.0893 | -- | 0.858 | -- | 0.602 | -0.462 | -- | 24.72 | 247 | -- | -- |
| 44.44 | 0.313 | 12 | 0.172 | 0.664 | -- | 0.122 | -- | -0.398 | 17.8 | -- | -- | -- | -- |
| 44.47 | 0.312 | 12 | 0.171 | 0.664 | -- | -- | -- | -0.397 | 17.8 | -- | -- | -- | -- |
| 44.42 | 0.31 | 12 | 0.0124 | -- | 0.907 | -- | -- | -0.48 | -- | 24.8 | 254 | -- | -- |
| 36.59 | 0.282 | 12 | -- | 0.488 | 0.749 | -- | -- | -0.455 | 19.3 | 25.3 | 24 | -- | -- |
| 67.35 | 0.383 | 12 | 0.151 | -- | -- | -- | -- | -0.413 | -- | -- | -- | -- | -- |
| 45.24 | 0.315 | 12 | -- | 0.662 | -- | -- | -- | -0.416 | 17.8 | -- | -- | -- | -- |
| 44.43 | 0.31 | 12 | -- | -- | 0.908 | -- | -- | -0.481 | -- | 24.8 | 255 | -- | -- |
| 67.95 | 0.385 | 12 | -- | -- | -- | -- | -- | -0.429 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 34.55 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 6 | 34.84 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 7 | 34.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 8 | 34.99 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 12 | 35.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 13 | 35.03 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 24 | 35.14 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 26 | 35.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 28 | 35.20 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 40 | 35.27 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 56 | 35.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 59 | 35.34 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 95 | 35.48 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 98 | 35.49 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 118 | 35.55 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 152 | 35.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 159 | 35.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 21 | 17 |
| 160 | 35.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 164 | 35.65 | temperature | 25 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 171 | 35.66 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 174 | 35.67 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 178 | 35.67 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 192 | 35.69 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 204 | 35.70 | radiation | 20 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 209 | 35.71 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 215 | 35.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 225 | 35.73 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 19 |
| 254 | 35.75 | radiation | 10 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 292 | 35.80 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 4 |
| 297 | 35.80 | radiation | 20 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 317 | 35.84 | radiation | 10 | 720 | > th | dose independent | rect. | 12 | 23 |
| 341 | 35.85 | radiation | 40 | 1440 | < th | dose dependent | rect. | 21 | 17 |
| 345 | 35.86 | radiation | 40 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 351 | 35.87 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 397 | 35.92 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 420 | 35.94 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 534 | 36.00 | radiation | 40 | 1440 | < th | dose dependent | sin | 1 | NA |
| 564 | 36.01 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 571 | 36.02 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 583 | 36.03 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 584 | 36.03 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 10 |
| 586 | 36.03 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 624 | 36.05 | radiation | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 637 | 36.05 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 661 | 36.06 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 715 | 36.08 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 762 | 36.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 855 | 36.12 | radiation | 10 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 903 | 36.15 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 943 | 36.17 | radiation | 40 | 1440 | < th | dose independent | sin | 20 | NA |