BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0245000 Os12g0245000|AK099682
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os12g0245000  Hypothetical protein                                637   0.0  
Os12g0245100  Hypothetical protein                                177   1e-44
Os04g0127800  Conserved hypothetical protein                       89   4e-18
Os08g0564800  Conserved hypothetical protein                       69   5e-12

>Os12g0245000 Hypothetical protein
          Length = 318

 Score =  637 bits (1644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/318 (96%), Positives = 306/318 (96%)

Query: 1   MIHQILNTQPGAIPPLAFHWCCNQLLQHLVNSVRTQGQPTVEPNVHGHQRCRGAGWSSGI 60
           MIHQILNTQPGAIPPLAFHWCCNQLLQHLVNSVRTQGQPTVEPNVHGHQRCRGAGWSSGI
Sbjct: 1   MIHQILNTQPGAIPPLAFHWCCNQLLQHLVNSVRTQGQPTVEPNVHGHQRCRGAGWSSGI 60

Query: 61  PERLADRNVSEDGGIGGVDSRRNIREMNGKIKETNASRESPRILKPTGEPNPSTGGIRIQ 120
           PERLADRNVSEDGGIGGVDSRRNIREMNGKIKETNASRESPRILKPTGEPNPSTGGIRIQ
Sbjct: 61  PERLADRNVSEDGGIGGVDSRRNIREMNGKIKETNASRESPRILKPTGEPNPSTGGIRIQ 120

Query: 121 NNRQEQPAEMTIFHPWKNITDRTSAYELSHIDNLVNHEDDETKRQKEQSVHITXXXXXXX 180
           NNRQEQPAEMTIFHPWKNITDRTSAYELSHIDNLVNHEDDETKRQKEQSVHIT       
Sbjct: 121 NNRQEQPAEMTIFHPWKNITDRTSAYELSHIDNLVNHEDDETKRQKEQSVHITLLYEINL 180

Query: 181 XXXXXFDTVISITGHKHGGTVIKFSYNAVSLAQDMELPFAAYGTSPLKPAKLFVPADYPR 240
                FDTVISITGHKHGGTVIKFSYNAVSLAQDMELPFAAYGTSPLKPAKLFVPADYPR
Sbjct: 181 INEELFDTVISITGHKHGGTVIKFSYNAVSLAQDMELPFAAYGTSPLKPAKLFVPADYPR 240

Query: 241 SSPVYEDGDEQHQGMYSVISGMVDKVFQRALRKLPVPMSIRDMARQWGISVRTVTNGGGT 300
           SSPVYEDGDEQHQGMYSVISGMVDKVFQRALRKLPVPMSIRDMARQWGISVRTVTNGGGT
Sbjct: 241 SSPVYEDGDEQHQGMYSVISGMVDKVFQRALRKLPVPMSIRDMARQWGISVRTVTNGGGT 300

Query: 301 FSSGYGQWESCTDEFASP 318
           FSSGYGQWESCTDEFASP
Sbjct: 301 FSSGYGQWESCTDEFASP 318



>Os12g0245100 Hypothetical protein
          Length = 477

 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 109/252 (43%), Positives = 137/252 (54%), Gaps = 19/252 (7%)

Query: 82  RNIREMNGKIKETNASRESPRILKPTGEPNPSTGGIRIQNNRQEQPAEMTIFHPWKNITD 141
           R  RE   KI E NA+R + +  +P G P          + R++   +  I      +  
Sbjct: 226 RFYRETKAKINEMNANRHNNQQEQPAGLPRQRITDRTPSSARRQNRNDNVIGQSEDKLRC 285

Query: 142 RTSAYELSH--IDNLVNH-----EDDET--KRQKEQSVHITXXXXXXXXXXXXFDTVISI 192
           R  +       ID L+N      EDD T  KRQK + V+               DTV+ I
Sbjct: 286 RVESVVAKKKPIDRLINALRHSVEDDRTDVKRQKTRHVNSALANEIDAMNAKLIDTVVRI 345

Query: 193 TGHKHGGTVIKFSYNAVSLAQDMELPFAAYGTSPLKPAKLFVPADYPRSSPVY----EDG 248
            G K GGT I+FSY AVSLA DM+  FAAYGTSP+KP KLFVPADYPRSSPV     +DG
Sbjct: 346 AGEKDGGTEIEFSYTAVSLALDMKQLFAAYGTSPVKPVKLFVPADYPRSSPVVSNNNDDG 405

Query: 249 DEQHQGMYSVISGMVDKVFQRALRKLPVPMSIRDMARQWGISVRTVT------NGGGTFS 302
           DEQ +GM+  ISGMV   F  ALR+LP  MS++ MA +W   V+ +       +GGGTFS
Sbjct: 406 DEQRRGMFGEISGMVSAAFHCALRELPPSMSVKQMASEWNSCVQMIMKKFAIRHGGGTFS 465

Query: 303 SGYGQWESCTDE 314
           S +GQW  CT E
Sbjct: 466 SRHGQWMDCTVE 477



>Os04g0127800 Conserved hypothetical protein
          Length = 988

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 70/119 (58%), Gaps = 7/119 (5%)

Query: 198 GGTVIKFSYNAVSLAQDMELPFAAYGTSPLKPAKLFVPADYPRSSPVYEDGDEQHQGMYS 257
           GG +IK SY ++SL+  ++  FAA   + + P KL VPADYP+SSP+  D D++ Q   S
Sbjct: 861 GGMLIKLSYISMSLSPSLKSLFAASEMTIVMPVKLLVPADYPKSSPILVDNDDE-QRRLS 919

Query: 258 VISGMVDKVFQRALRKLPVPMSIRDMARQW-GISVRTVT-----NGGGTFSSGYGQWES 310
            IS  V   F  A+ +LP P SI  MA  W G   R VT     +GGGTFSS + QW +
Sbjct: 920 DISYAVAVAFGCAVDELPEPRSIEAMAMAWDGCVRRAVTEVAHRHGGGTFSSRHNQWRA 978



>Os08g0564800 Conserved hypothetical protein
          Length = 1320

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 52/96 (54%)

Query: 199  GTVIKFSYNAVSLAQDMELPFAAYGTSPLKPAKLFVPADYPRSSPVYEDGDEQHQGMYSV 258
            GTVIK ++ AV+++  ++  FA+   SP+ P ++ VPA YP+ SPV  D     Q     
Sbjct: 1199 GTVIKCTFTAVAVSPSLKSMFASAQMSPILPLRVLVPASYPKCSPVLLDKFPDEQRNSDD 1258

Query: 259  ISGMVDKVFQRALRKLPVPMSIRDMARQWGISVRTV 294
            +S      F   LR L  PMS+R++AR W    R V
Sbjct: 1259 LSTKARSKFSILLRGLAEPMSLREIARTWDACARKV 1294



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,103,106
Number of extensions: 539387
Number of successful extensions: 1297
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 4
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)