Os08g0564800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0564800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.5 | 0.272 | 13.2 | 2.46 | 0.47 | -0.639 | 0.189 | 2.21 | 0.894 | 0.422 | 21.21 | 1527 | -- | -- |
| 36.51 | 0.284 | 13.2 | 1.78 | 0.243 | -0.96 | 0.139 | -- | 0.722 | 22.2 | 15.21 | 4602 | -- | -- |
| 33.65 | 0.27 | 13.2 | 2.46 | 0.471 | -0.639 | -- | 2.22 | 0.894 | 0.437 | 21.2 | 1516 | -- | -- |
| 36.56 | 0.283 | 13.2 | 1.78 | 0.241 | -0.998 | -- | -- | 0.722 | 22.2 | 12.26 | 5707 | -- | -- |
| 38.68 | 0.291 | 13.2 | 1.98 | -- | -0.959 | -- | 1.25 | 0.792 | -- | 21.15 | 1623 | -- | -- |
| 45.95 | 0.318 | 13.3 | 1.59 | 0.454 | -- | 0.205 | -- | 0.584 | 0.458 | -- | -- | -- | -- |
| 46.13 | 0.318 | 13.3 | 1.59 | 0.454 | -- | -- | -- | 0.583 | 0.457 | -- | -- | -- | -- |
| 39.74 | 0.295 | 13.2 | 1.81 | -- | -1.16 | -- | -- | 0.744 | -- | 9.579 | 5992 | -- | -- |
| 75 | 0.403 | 13.4 | -- | 0.438 | 0.942 | -- | -- | 0.0967 | 0.476 | 16.53 | 47520 | -- | -- |
| 59.05 | 0.359 | 13.3 | 1.6 | -- | -- | -- | -- | 0.59 | -- | -- | -- | -- | -- |
| 112.49 | 0.496 | 13.3 | -- | 0.477 | -- | -- | -- | 0.406 | 0.625 | -- | -- | -- | -- |
| 87.01 | 0.434 | 13.4 | -- | -- | 0.966 | -- | -- | 0.0924 | -- | 16.7 | 47520 | -- | -- |
| 126.78 | 0.526 | 13.3 | -- | -- | -- | -- | -- | 0.412 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.46 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 2 | 32.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 8 |
| 3 | 32.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 10 | 32.59 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 18 | 32.67 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 60 | 32.86 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 62 | 32.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 79 | 32.98 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 80 | 32.98 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 81 | 32.98 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 84 | 32.98 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 90 | 32.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 107 | 33.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 5 |
| 122 | 33.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 125 | 33.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 139 | 33.23 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 141 | 33.24 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 174 | 33.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 183 | 33.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 188 | 33.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 202 | 33.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 219 | 33.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 266 | 33.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 12 |
| 279 | 33.52 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 414 | 33.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 418 | 33.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 488 | 33.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 507 | 33.79 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 517 | 33.80 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 518 | 33.80 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 544 | 33.82 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 563 | 33.83 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 571 | 33.84 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 578 | 33.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 603 | 33.86 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 611 | 33.86 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 612 | 33.86 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 627 | 33.87 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 637 | 33.88 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 644 | 33.88 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 646 | 33.88 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 719 | 33.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 724 | 33.93 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 888 | 34.04 | radiation | 1 | 4320 | > th | dose independent | sin | 14 | NA |
| 959 | 34.10 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 984 | 34.13 | radiation | 1 | 4320 | < th | dose independent | sin | 14 | NA |