BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0207600 Os12g0207600|Os12g0207600
(520 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0207600 Similar to Ribulose bisphosphate carboxylase l... 961 0.0
AK105600 470 e-133
Os01g0791600 Similar to Ribulose bisphosphate carboxylase l... 271 9e-73
Os05g0427800 Similar to Ribulose bisphosphate carboxylase l... 259 2e-69
Os01g0791033 Similar to Ribulose bisphosphate carboxylase l... 207 2e-53
Os11g0532100 166 3e-41
Os06g0598500 Similar to Ribulose bisphosphate carboxylase l... 154 2e-37
Os11g0532750 Similar to Ribulose bisphosphate carboxylase l... 133 4e-31
Os10g0356000 Similar to Ribulose bisphosphate carboxylase l... 130 2e-30
Os10g0357350 Retrotransposon gag protein family protein 86 1e-16
>Os12g0207600 Similar to Ribulose bisphosphate carboxylase large chain precursor
(EC 4.1.1.39) (RuBisCO large subunit)
Length = 520
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/520 (90%), Positives = 469/520 (90%)
Query: 1 MSPQTETKANVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKANVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQ
Sbjct: 1 MSPQTETKANVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60
Query: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGFVTNMFTSI 120
SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGFVTNMFTSI
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGFVTNMFTSI 120
Query: 121 VGNIFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYDRPLLGCTIKPKLGL 180
VGNIFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYDRPLLGCTIKPKLGL
Sbjct: 121 VGNIFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYDRPLLGCTIKPKLGL 180
Query: 181 SAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYL 240
SAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYL
Sbjct: 181 SAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYL 240
Query: 241 NATAGDSPQILVWLIIXXXXXXXXXXXEQCMQLLIDRKIMDWVSMPGVIPVASGGIHVWH 300
NATAGDSPQILVWLII EQCMQLLIDRKIMDWVSMPGVIPVASGGIHVWH
Sbjct: 241 NATAGDSPQILVWLIIAATTAYFFTFTEQCMQLLIDRKIMDWVSMPGVIPVASGGIHVWH 300
Query: 301 MPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREACKWSP 360
MPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREACKWSP
Sbjct: 301 MPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLAREACKWSP 360
Query: 361 ELAAACEIWKVIKFEFEPYLQKKYYEPRCRGFESLLAHSLPKGKGLYFPPEGRKTMIGIA 420
ELAAACEIWKVIKFEFEPYLQKKYYEPRCRGFESLLAHSLPKGKGLYFPPEGRKTMIGIA
Sbjct: 361 ELAAACEIWKVIKFEFEPYLQKKYYEPRCRGFESLLAHSLPKGKGLYFPPEGRKTMIGIA 420
Query: 421 DVKLLNLEKYMXXXXXXXXXXXMVKEEKEENWGSVEFQVFSFTNKIRRLASHLELHKKDF 480
DVKLLNLEKYM MVKEEKEENWGSVEFQVFSFTNKIRRLASHLELHKKDF
Sbjct: 421 DVKLLNLEKYMKKKGGRKFFGFMVKEEKEENWGSVEFQVFSFTNKIRRLASHLELHKKDF 480
Query: 481 SSEXXXXXXXXXXXXXXAYLAKKNRVRYKKLISQLDIREW 520
SSE AYLAKKNRVRYKKLISQLDIREW
Sbjct: 481 SSERGLRRLLGKRQRLLAYLAKKNRVRYKKLISQLDIREW 520
>AK105600
Length = 484
Score = 470 bits (1210), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/251 (90%), Positives = 231/251 (92%)
Query: 1 MSPQTETKANVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKA+VGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQ
Sbjct: 8 MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 67
Query: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGFVTNMFTSI 120
SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEG VTNMFTSI
Sbjct: 68 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSI 127
Query: 121 VGNIFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYDRPLLGCTIKPKLGL 180
VGN+FGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKY RPLLGCTIKPKLGL
Sbjct: 128 VGNVFGFKALRALRLEDLRIPPTYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL 187
Query: 181 SAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYL 240
SAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYL
Sbjct: 188 SAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYL 247
Query: 241 NATAGDSPQIL 251
NATAG +++
Sbjct: 248 NATAGTCEEMI 258
Score = 206 bits (523), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/105 (92%), Positives = 97/105 (92%), Gaps = 7/105 (6%)
Query: 281 DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA 340
DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA
Sbjct: 374 DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA 433
Query: 341 CVQARNEGRDLARE-------ACKWSPELAAACEIWKVIKFEFEP 378
CVQARNEGRDLARE ACKWSPELAAACEIWK IKFEFEP
Sbjct: 434 CVQARNEGRDLAREGNEIIRSACKWSPELAAACEIWKAIKFEFEP 478
>Os01g0791600 Similar to Ribulose bisphosphate carboxylase large chain precursor
(EC 4.1.1.39) (RuBisCO large subunit)
Length = 379
Score = 271 bits (693), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 132/150 (88%), Positives = 134/150 (89%)
Query: 1 MSPQTETKANVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKA+VGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQ
Sbjct: 1 MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60
Query: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGFVTNMFTSI 120
SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEG VTNMFTSI
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSI 120
Query: 121 VGNIFGFKALRALRLEDLRIPPTYSKTFQG 150
VGN+FGFKALRALRLEDLRIPPTYSKTFQG
Sbjct: 121 VGNVFGFKALRALRLEDLRIPPTYSKTFQG 150
>Os05g0427800 Similar to Ribulose bisphosphate carboxylase large chain precursor
(EC 4.1.1.39) (RuBisCO large subunit)
Length = 148
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 128/148 (86%), Positives = 131/148 (88%)
Query: 1 MSPQTETKANVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKA+VGFKAGVKDYKLTYYTPEYETKDTDILAAFR+TPQ
Sbjct: 1 MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRITPQPGVPPEEAGAAVAAE 60
Query: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGFVTNMFTSI 120
SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEG VTNMFTSI
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSI 120
Query: 121 VGNIFGFKALRALRLEDLRIPPTYSKTF 148
VGN+FGFKALRALRLEDLRIP TYSKTF
Sbjct: 121 VGNVFGFKALRALRLEDLRIPLTYSKTF 148
>Os01g0791033 Similar to Ribulose bisphosphate carboxylase large chain precursor
(EC 4.1.1.39) (RuBisCO large subunit)
Length = 262
Score = 207 bits (526), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/105 (92%), Positives = 97/105 (92%), Gaps = 7/105 (6%)
Query: 281 DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA 340
DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA
Sbjct: 152 DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA 211
Query: 341 CVQARNEGRDLARE-------ACKWSPELAAACEIWKVIKFEFEP 378
CVQARNEGRDLARE ACKWSPELAAACEIWK IKFEFEP
Sbjct: 212 CVQARNEGRDLAREGNEIIRSACKWSPELAAACEIWKAIKFEFEP 256
>Os11g0532100
Length = 176
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/103 (85%), Positives = 92/103 (89%), Gaps = 7/103 (6%)
Query: 283 VSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEACV 342
VSMPGVIPVASGG+HVWHMPALTEIFGD+ VLQFGGGTLGHPWGNA AAANRVALEACV
Sbjct: 68 VSMPGVIPVASGGVHVWHMPALTEIFGDNYVLQFGGGTLGHPWGNAARAAANRVALEACV 127
Query: 343 QARNEGRDLARE-------ACKWSPELAAACEIWKVIKFEFEP 378
QARN+GRDLARE ACKWSPELAAACE+WK IKFEFEP
Sbjct: 128 QARNKGRDLAREGNEIIRSACKWSPELAAACEVWKAIKFEFEP 170
>Os06g0598500 Similar to Ribulose bisphosphate carboxylase large chain precursor
(EC 4.1.1.39) (RuBisCO large subunit)
Length = 273
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/83 (86%), Positives = 75/83 (90%)
Query: 281 DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA 340
DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA
Sbjct: 186 DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALEA 245
Query: 341 CVQARNEGRDLAREACKWSPELA 363
CVQARN+G L + K S +LA
Sbjct: 246 CVQARNKGAILLVKVMKLSDQLA 268
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 50/65 (76%)
Query: 1 MSPQTETKANVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKA+VGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQ
Sbjct: 1 MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60
Query: 61 SSTGT 65
SSTGT
Sbjct: 61 SSTGT 65
>Os11g0532750 Similar to Ribulose bisphosphate carboxylase large chain precursor
(EC 4.1.1.39) (RuBisCO large subunit)
Length = 108
Score = 133 bits (334), Expect = 4e-31, Method: Composition-based stats.
Identities = 62/74 (83%), Positives = 64/74 (86%), Gaps = 7/74 (9%)
Query: 312 SVLQFGGGTLGHPWGNAPGAAANRVALEACVQARNEGRDLARE-------ACKWSPELAA 364
SVLQFGGGTLGHPWG AP AAANRVALEACVQARN+GRDLARE ACKWSPELAA
Sbjct: 29 SVLQFGGGTLGHPWGYAPRAAANRVALEACVQARNKGRDLAREGNEIIRSACKWSPELAA 88
Query: 365 ACEIWKVIKFEFEP 378
ACE+WK IKFEFEP
Sbjct: 89 ACEVWKAIKFEFEP 102
>Os10g0356000 Similar to Ribulose bisphosphate carboxylase large chain precursor
(EC 4.1.1.39) (RuBisCO large subunit)
Length = 176
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 281 DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALE 339
DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALE
Sbjct: 118 DWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAAANRVALE 176
>Os10g0357350 Retrotransposon gag protein family protein
Length = 443
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/47 (82%), Positives = 44/47 (93%), Gaps = 1/47 (2%)
Query: 380 LQKKYYEPRCRGFESLLAHSLPKGKGLYFPPEGRKTMIGIAD-VKLL 425
++ + YEPRCRGFESLLAHSLPKGKGLYFPPEGRKTMIGIAD ++LL
Sbjct: 29 IRARGYEPRCRGFESLLAHSLPKGKGLYFPPEGRKTMIGIADPLRLL 75
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,184,341
Number of extensions: 698790
Number of successful extensions: 1200
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1196
Number of HSP's successfully gapped: 12
Length of query: 520
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 415
Effective length of database: 11,553,331
Effective search space: 4794632365
Effective search space used: 4794632365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)