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Os12g0207600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0228) R2 : 0.835
β1 : -1.2 (0.0829) R2dD : 0.0766 R2D : 0.0726
β2 : 1.46 (0.0636) R2dC : 0.261 R2C : 0.485
β3 : -2.18 (0.114) R2dE : 0.197 R2E : 0.483
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.361 (0.0511) R2dN8 : 0.026 R2N8 : 0.0447
σ : 0.414
deviance : 79.2
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_____
C
peak time of C : 21.7
E
wheather : temperature
threshold : 22.58
memory length : 123
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 1.26
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.47 0.419 13.7 -0.965 1.09 -2.25 0.251 1.26 -0.326 22.2 20.19 100 0.0977 --
80.65 0.418 13.7 -1.08 1.19 -2.16 0.0899 -- -0.368 22.1 20.45 106 0.273 --
79.51 0.415 13.7 -0.998 1.15 -2.21 -- 1.08 -0.329 22.1 20.52 109 0.32 --
79.2 0.414 13.7 -1.2 1.46 -2.18 -- -- -0.361 21.7 22.58 123 1.26 --
97.81 0.461 13.7 -1.05 -- -2.91 -- 0.226 -0.409 -- 12.72 269 0.000594 --
136.86 0.548 13.8 -1.46 2.12 -- 0.211 -- -0.713 21.4 -- -- -- --
137.02 0.548 13.8 -1.47 2.12 -- -- -- -0.714 21.4 -- -- -- --
97.59 0.46 13.7 -1.07 -- -2.91 -- -- -0.389 -- 12.51 285 3.35e-08 --
113.2 0.496 13.7 -- 1.4 -2.3 -- -- -0.192 21.7 22.37 146 1.23 --
399.98 0.935 13.8 -1.46 -- -- -- -- -0.721 -- -- -- -- --
194.01 0.652 13.8 -- 2.12 -- -- -- -0.55 21.3 -- -- -- --
124.4 0.519 13.6 -- -- -3.24 -- -- -0.204 -- 16.01 229 0.000404 --
456.1 0.997 13.7 -- -- -- -- -- -0.559 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.37 temperature 20 270 > th dose dependent rect. 19 16
6 79.70 temperature 20 90 > th dose dependent sin 6 NA
12 81.31 temperature 10 90 > th dose dependent sin 6 NA
16 81.64 temperature 30 90 < th dose dependent sin 5 NA
50 84.01 temperature 25 270 > th dose independent rect. 19 17
76 85.56 temperature 25 270 > th dose independent rect. 17 20
92 86.07 temperature 20 10 > th dose dependent rect. 20 20
109 87.07 temperature 25 270 > th dose independent sin 7 NA
188 90.13 temperature 30 90 < th dose dependent rect. 3 16
189 90.25 temperature 25 270 < th dose independent sin 7 NA
199 90.57 temperature 25 90 < th dose independent sin 5 NA
216 91.06 temperature 30 90 < th dose dependent rect. 3 14
218 91.08 temperature 20 30 > th dose dependent rect. 17 23
280 92.53 temperature 30 90 < th dose dependent rect. 23 20
284 92.61 temperature 25 90 > th dose independent rect. 24 15
301 92.94 temperature 30 90 < th dose dependent rect. 23 22
302 92.97 temperature 30 270 < th dose dependent rect. 23 11
317 93.26 temperature 25 270 > th dose independent rect. 6 6
325 93.38 temperature 20 270 > th dose dependent rect. 4 8
355 93.80 temperature 25 90 > th dose independent rect. 7 8
357 93.87 temperature 30 90 < th dose dependent rect. 3 12
387 94.47 temperature 30 270 < th dose dependent rect. 23 18
412 94.92 temperature 15 10 > th dose dependent rect. 8 19
432 95.22 temperature 10 270 > th dose dependent rect. 6 19
440 95.31 temperature 25 270 < th dose independent rect. 23 15
443 95.33 temperature 10 270 > th dose dependent rect. 5 21
465 95.69 temperature 25 90 > th dose independent rect. 4 11
491 95.98 temperature 20 10 > th dose dependent rect. 7 22
514 96.32 temperature 25 270 < th dose independent rect. 23 12
538 96.58 temperature 25 270 < th dose independent rect. 22 20
547 96.67 temperature 30 270 < th dose dependent rect. 1 9
562 96.85 temperature 20 10 > th dose dependent rect. 7 9
569 96.93 temperature 10 270 > th dose dependent rect. 7 16
591 97.16 temperature 30 90 < th dose dependent rect. 11 23
602 97.24 temperature 20 90 > th dose dependent rect. 7 8
608 97.25 temperature 10 90 > th dose dependent rect. 6 23
615 97.34 temperature 30 90 < th dose dependent rect. 3 8
627 97.40 temperature 25 270 < th dose independent rect. 1 13
658 97.62 temperature 25 90 < th dose independent rect. 3 12
659 97.62 temperature 25 90 < th dose independent rect. 3 14
691 97.88 temperature 30 90 < th dose dependent rect. 21 23
701 97.94 temperature 25 90 < th dose independent rect. 3 16
703 97.94 temperature 30 10 < th dose dependent rect. 23 23
738 98.16 temperature 25 10 > th dose independent rect. 7 9
746 98.20 temperature 30 10 < th dose dependent rect. 1 23
759 98.32 temperature 30 10 < th dose dependent rect. 23 21
777 98.47 temperature 30 10 < th dose dependent rect. 21 23
800 98.66 temperature 30 10 < th dose dependent rect. 3 23
801 98.66 temperature 30 10 < th dose dependent rect. 13 23
840 98.90 temperature 30 30 < th dose dependent rect. 9 23
860 99.05 temperature 25 270 < th dose independent rect. 1 10
934 99.69 temperature 30 10 < th dose dependent no NA NA
951 99.78 temperature 25 90 > th dose independent rect. 7 23
960 99.83 temperature 30 10 < th dose dependent rect. 11 23
968 99.87 temperature 30 10 < th dose dependent rect. 15 23