Os01g0791600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit).
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Os01g0791600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.49 | 0.537 | 6.77 | -0.827 | 0.845 | 3.21 | 0.945 | 1.76 | -0.285 | 1.49 | 24.01 | 6241 | -- | -- |
| 131.89 | 0.535 | 6.72 | -0.651 | 0.854 | 2.75 | 0.875 | -- | -0.259 | 1.5 | 25.21 | 6317 | -- | -- |
| 133.79 | 0.539 | 6.79 | -0.831 | 0.853 | 3.35 | -- | 2.06 | -0.293 | 1.46 | 23.7 | 6389 | -- | -- |
| 135.21 | 0.542 | 6.72 | -0.688 | 0.878 | 2.74 | -- | -- | -0.25 | 1.46 | 25.24 | 6490 | -- | -- |
| 176.44 | 0.619 | 6.78 | -0.834 | -- | 3.39 | -- | 2.27 | -0.302 | -- | 23.31 | 6100 | -- | -- |
| 232.87 | 0.715 | 6.87 | -2.09 | 0.787 | -- | 0.884 | -- | -0.946 | 1.56 | -- | -- | -- | -- |
| 236 | 0.719 | 6.88 | -2.12 | 0.787 | -- | -- | -- | -0.951 | 1.57 | -- | -- | -- | -- |
| 178.4 | 0.622 | 6.71 | -0.693 | -- | 2.68 | -- | -- | -0.255 | -- | 24.67 | 6092 | -- | -- |
| 142.73 | 0.556 | 6.68 | -- | 0.855 | 3.22 | -- | -- | -0.0749 | 1.54 | 24.59 | 7576 | -- | -- |
| 273.88 | 0.773 | 6.87 | -2.09 | -- | -- | -- | -- | -0.934 | -- | -- | -- | -- | -- |
| 354.28 | 0.88 | 6.82 | -- | 0.749 | -- | -- | -- | -0.715 | 1.48 | -- | -- | -- | -- |
| 186.85 | 0.637 | 6.68 | -- | -- | 3.17 | -- | -- | -0.0826 | -- | 24.23 | 7475 | -- | -- |
| 388.76 | 0.92 | 6.82 | -- | -- | -- | -- | -- | -0.702 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.47 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 128.98 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 129.42 | temperature | 20 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 28 | 130.60 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 58 | 131.31 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 70 | 131.61 | temperature | 20 | 14400 | < th | dose dependent | sin | 9 | NA |
| 72 | 131.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 136 | 132.66 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 189 | 133.50 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 194 | 133.55 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 199 | 133.62 | humidity | 60 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 210 | 133.71 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 216 | 133.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 217 | 133.89 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 237 | 134.09 | temperature | 20 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 256 | 134.25 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 15 |
| 287 | 134.46 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 294 | 134.51 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 302 | 134.56 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 318 | 134.62 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 320 | 134.64 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 321 | 134.65 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 324 | 134.66 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 350 | 134.78 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 362 | 134.82 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 18 |
| 404 | 134.99 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 435 | 135.06 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 443 | 135.08 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 15 |
| 446 | 135.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 22 |
| 447 | 135.09 | temperature | 20 | 14400 | < th | dose independent | sin | 6 | NA |
| 481 | 135.14 | temperature | 20 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 491 | 135.15 | temperature | 20 | 43200 | < th | dose independent | sin | 3 | NA |
| 524 | 135.18 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 545 | 135.20 | temperature | 20 | 14400 | > th | dose independent | sin | 6 | NA |
| 558 | 135.21 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 566 | 135.21 | temperature | 20 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 567 | 135.22 | temperature | 20 | 14400 | < th | dose independent | sin | 12 | NA |
| 575 | 135.22 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 580 | 135.23 | temperature | 20 | 43200 | > th | dose independent | sin | 3 | NA |
| 604 | 135.24 | temperature | 20 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 605 | 135.24 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 620 | 135.26 | temperature | 20 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 669 | 135.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 675 | 135.30 | temperature | 20 | 14400 | > th | dose independent | sin | 12 | NA |
| 676 | 135.30 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 678 | 135.30 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 704 | 135.31 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 705 | 135.31 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 706 | 135.32 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 709 | 135.32 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 748 | 135.33 | temperature | 20 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 750 | 135.33 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 774 | 135.35 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 777 | 135.35 | temperature | 20 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 787 | 135.35 | temperature | 20 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 793 | 135.36 | temperature | 20 | 43200 | < th | dose independent | sin | 16 | NA |
| 831 | 135.38 | temperature | 20 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 974 | 135.47 | temperature | 20 | 43200 | > th | dose independent | sin | 16 | NA |
| 985 | 135.47 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |