BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0791600 Os01g0791600|Os01g0791600
(379 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG00490.1 | chrC:54958-56397 FORWARD LENGTH=480 258 5e-69
ATCG00430.1 | chrC:49257-49934 REVERSE LENGTH=226 202 4e-52
AT5G11770.1 | chr5:3791148-3792929 REVERSE LENGTH=219 122 2e-28
ATCG00270.1 | chrC:32711-33772 FORWARD LENGTH=354 110 2e-24
ATCG00280.1 | chrC:33720-35141 FORWARD LENGTH=474 83 2e-16
>ATCG00490.1 | chrC:54958-56397 FORWARD LENGTH=480
Length = 479
Score = 258 bits (658), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 130/166 (78%), Positives = 136/166 (81%), Gaps = 7/166 (4%)
Query: 1 MSPQTETKASVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQXXXXXXXXXXXXXXX 60
MSPQTETKASVGFKAGVK+YKLTYYTPEYETKDTDILAAFRVTPQ
Sbjct: 1 MSPQTETKASVGFKAGVKEYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE 60
Query: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEDNQYIAYVAYPLDLFEEGSVTNMFTSI 120
SSTGTWTTVWTDGLTSLDRYKGRCYHIEPV GE+ Q+IAYVAYPLDLFEEGSVTNMFTSI
Sbjct: 61 SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVPGEETQFIAYVAYPLDLFEEGSVTNMFTSI 120
Query: 121 VGNVFGFKALRALRLEDLRIPPTYSKTFQG-------SRFDFDRYG 159
VGNVFGFKAL ALRLEDLRIPP Y+KTFQG R ++YG
Sbjct: 121 VGNVFGFKALAALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYG 166
>ATCG00430.1 | chrC:49257-49934 REVERSE LENGTH=226
Length = 225
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209
GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG
Sbjct: 53 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 112
Query: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID 245
GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID
Sbjct: 113 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID 148
>AT5G11770.1 | chr5:3791148-3792929 REVERSE LENGTH=219
Length = 218
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209
+R+D DR+G++ R SPRQ+D ++ AGT+T KMAP+L ++Y+QMPEP++VI+MG+C G
Sbjct: 103 AARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGG 162
Query: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVI 244
G + SYS VRG D+++PVD+Y+PGCPP EA++
Sbjct: 163 GYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALL 196
>ATCG00270.1 | chrC:32711-33772 FORWARD LENGTH=354
Length = 353
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/51 (96%), Positives = 51/51 (100%)
Query: 260 YDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEELI 310
YDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEE++
Sbjct: 297 YDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVL 347
>ATCG00280.1 | chrC:33720-35141 FORWARD LENGTH=474
Length = 473
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/39 (100%), Positives = 39/39 (100%)
Query: 313 SEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGL 351
SEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGL
Sbjct: 299 SEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGL 337
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,526,378
Number of extensions: 286923
Number of successful extensions: 419
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 5
Length of query: 379
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 279
Effective length of database: 8,364,969
Effective search space: 2333826351
Effective search space used: 2333826351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)