Os06g0598500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit).
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Os06g0598500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.58 | 0.543 | 16.3 | 0.449 | 0.156 | -0.916 | 0.391 | -2.12 | -1.18 | 22.4 | 21.4 | 3018 | -- | -- |
| 139.61 | 0.55 | 16.2 | 0.869 | 0.183 | -0.67 | 0.4 | -- | -1.06 | 22.3 | 22.2 | 1969 | -- | -- |
| 134.18 | 0.54 | 16.3 | 0.434 | 0.154 | -0.921 | -- | -2.13 | -1.18 | 22.8 | 21.4 | 3045 | -- | -- |
| 140.17 | 0.551 | 16.2 | 0.849 | 0.151 | -0.674 | -- | -- | -1.06 | 22.5 | 22.1 | 1714 | -- | -- |
| 135.65 | 0.542 | 16.3 | 0.431 | -- | -0.915 | -- | -2.14 | -1.18 | -- | 21.41 | 3048 | -- | -- |
| 155.66 | 0.585 | 16.3 | 0.602 | 0.15 | -- | 0.441 | -- | -1.28 | 22.1 | -- | -- | -- | -- |
| 156.43 | 0.586 | 16.3 | 0.584 | 0.147 | -- | -- | -- | -1.29 | 22.4 | -- | -- | -- | -- |
| 141.51 | 0.554 | 16.2 | 0.832 | -- | -0.666 | -- | -- | -1.07 | -- | 22.1 | 1517 | -- | -- |
| 156.39 | 0.582 | 16.3 | -- | 0.152 | -0.45 | -- | -- | -1.21 | 22.7 | 22.5 | 1407 | -- | -- |
| 157.75 | 0.587 | 16.3 | 0.586 | -- | -- | -- | -- | -1.29 | -- | -- | -- | -- | -- |
| 165.42 | 0.602 | 16.3 | -- | 0.151 | -- | -- | -- | -1.35 | 22.7 | -- | -- | -- | -- |
| 157.25 | 0.586 | 16.3 | -- | -- | -0.376 | -- | -- | -1.25 | -- | 22.1 | 1517 | -- | -- |
| 166.82 | 0.603 | 16.3 | -- | -- | -- | -- | -- | -1.35 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 16 | 133.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 23 | 133.97 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 28 | 134.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 34 | 134.39 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 38 | 134.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 40 | 134.56 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 42 | 134.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 62 | 135.16 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 73 | 135.25 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 76 | 135.26 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 80 | 135.28 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 81 | 135.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 82 | 135.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 114 | 135.41 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 127 | 135.46 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 174 | 135.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 257 | 135.91 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 342 | 136.10 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 547 | 136.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 758 | 137.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 846 | 137.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 851 | 137.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 876 | 137.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 893 | 137.30 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 903 | 137.31 | temperature | 10 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 905 | 137.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 906 | 137.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 931 | 137.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 933 | 137.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 953 | 137.42 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |