Os05g0427800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit).
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Os05g0427800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.77 | 0.508 | 13.3 | 0.344 | 0.473 | -0.651 | 0.25 | 7.64 | -0.838 | 6.43 | 26.55 | 3269 | -- | -- |
| 126.31 | 0.527 | 13.5 | -1.22 | 0.46 | -0.267 | 0.0979 | -- | -1.12 | 7.16 | 25.17 | 47520 | -- | -- |
| 116.88 | 0.504 | 13.3 | 0.383 | 0.47 | -0.669 | -- | 7.87 | -0.839 | 6.46 | 26.78 | 3268 | -- | -- |
| 126.33 | 0.527 | 13.5 | -1.22 | 0.459 | -0.271 | -- | -- | -1.12 | 7.18 | 25.17 | 47520 | -- | -- |
| 127.97 | 0.527 | 13.3 | 0.613 | -- | -0.728 | -- | 8.07 | -0.82 | -- | 27.45 | 2828 | -- | -- |
| 127.36 | 0.529 | 13.5 | -1.26 | 0.511 | -- | 0.19 | -- | -1.14 | 6.47 | -- | -- | -- | -- |
| 127.45 | 0.529 | 13.5 | -1.26 | 0.512 | -- | -- | -- | -1.14 | 6.48 | -- | -- | -- | -- |
| 136.96 | 0.547 | 13.6 | -1.19 | -- | -0.419 | -- | -- | -1.1 | -- | 25.17 | 47520 | -- | -- |
| 136.89 | 0.545 | 13.5 | -- | 0.513 | -0.914 | -- | -- | -0.727 | 6.36 | 7.901 | 47433 | -- | -- |
| 141.09 | 0.555 | 13.6 | -1.25 | -- | -- | -- | -- | -1.13 | -- | -- | -- | -- | -- |
| 169.16 | 0.608 | 13.5 | -- | 0.496 | -- | -- | -- | -1 | 6.62 | -- | -- | -- | -- |
| 150.29 | 0.571 | 13.5 | -- | -- | -0.901 | -- | -- | -0.722 | -- | 7.962 | 46768 | -- | -- |
| 181.99 | 0.63 | 13.5 | -- | -- | -- | -- | -- | -0.992 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.50 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 2 | 108.83 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 3 | 109.05 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 5 | 109.16 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 6 | 109.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 7 | 109.54 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 12 | 109.80 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 17 | 109.95 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 21 | 110.07 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 31 | 110.39 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 33 | 110.48 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 49 | 110.96 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 56 | 111.12 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 62 | 111.28 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 79 | 111.59 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 127 | 112.36 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 130 | 112.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 133 | 112.45 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 138 | 112.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 139 | 112.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 144 | 112.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 161 | 112.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 190 | 113.05 | wind | 5.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 205 | 113.19 | wind | 1.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 214 | 113.27 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 231 | 113.40 | wind | 5.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 264 | 113.62 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 270 | 113.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 302 | 113.85 | wind | 1.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 307 | 113.87 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 15 | 18 |
| 310 | 113.90 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 15 | 5 |
| 324 | 113.94 | wind | 1.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 334 | 114.03 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 350 | 114.10 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 373 | 114.22 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 382 | 114.25 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 385 | 114.26 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 405 | 114.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 22 |
| 431 | 114.36 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 433 | 114.38 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 440 | 114.41 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 461 | 114.44 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 462 | 114.46 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 22 |
| 466 | 114.48 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 491 | 114.53 | humidity | 60.0 | 14400 | > th | dose independent | sin | 18 | NA |
| 519 | 114.56 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 535 | 114.57 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 543 | 114.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 13 |
| 545 | 114.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 566 | 114.60 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 601 | 114.63 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 608 | 114.64 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 620 | 114.64 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 622 | 114.65 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 675 | 114.69 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 707 | 114.69 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 759 | 114.75 | humidity | 60.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 821 | 114.81 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 850 | 114.85 | radiation | 10.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 851 | 114.85 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 950 | 114.91 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |