BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0194600 Os12g0194600|Os12g0194600
(150 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0194600 Basic-leucine zipper (bZIP) transcription fact... 275 8e-75
Os11g0218000 Eukaryotic transcription factor, DNA-binding d... 187 2e-48
Os01g0756200 Similar to VirE2-interacting protein VIP1 80 5e-16
Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment) 77 4e-15
Os02g0538900 Eukaryotic transcription factor, DNA-binding d... 72 1e-13
Os01g0211800 Similar to VirE2-interacting protein VIP1 72 1e-13
>Os12g0194600 Basic-leucine zipper (bZIP) transcription factor domain containing
protein
Length = 150
Score = 275 bits (703), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 137/150 (91%), Positives = 137/150 (91%)
Query: 1 MSYAFNKLLPTTHFRQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIML 60
MSYAFNKLLPTTHFRQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIML
Sbjct: 1 MSYAFNKLLPTTHFRQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIML 60
Query: 61 DLENKALKQRLESLSQEHLIKRFQQEMFEREIGRLRSLFXXXXXXXXXXXXXGPTHSRSN 120
DLENKALKQRLESLSQEHLIKRFQQEMFEREIGRLRSLF GPTHSRSN
Sbjct: 61 DLENKALKQRLESLSQEHLIKRFQQEMFEREIGRLRSLFQQQQQQQHIPQQQGPTHSRSN 120
Query: 121 SRDLDSQFANMSLKHGDPNSGRDAVPGLRI 150
SRDLDSQFANMSLKHGDPNSGRDAVPGLRI
Sbjct: 121 SRDLDSQFANMSLKHGDPNSGRDAVPGLRI 150
>Os11g0218000 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 364
Score = 187 bits (475), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 107/126 (84%), Gaps = 1/126 (0%)
Query: 16 QYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESLS 75
QYAQRSRVRKLQYIAELER+VQALQ+EG++VSAEM+FL QQNIMLDLENKALKQRLESL+
Sbjct: 230 QYAQRSRVRKLQYIAELERKVQALQSEGIDVSAEMEFLSQQNIMLDLENKALKQRLESLA 289
Query: 76 QEHLIKRFQQEMFEREIGRLRSLFXXXXXXXXXXXXXGPTHSRSNSRDLDSQFANMSLKH 135
QE LIKRFQQEMFEREIGRLRSL+ T SRSNSRDLDSQFAN+SLKH
Sbjct: 290 QEQLIKRFQQEMFEREIGRLRSLYQQQQQQQKQPQPTT-TLSRSNSRDLDSQFANLSLKH 348
Query: 136 GDPNSG 141
DPNSG
Sbjct: 349 KDPNSG 354
>Os01g0756200 Similar to VirE2-interacting protein VIP1
Length = 265
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 56/85 (65%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ AQRSRVRKLQYI+ELER V LQ E +S + FL QQ +L + N LKQR+ +L
Sbjct: 148 RQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFLDQQRTILTVGNSHLKQRIAAL 207
Query: 75 SQEHLIKRFQQEMFEREIGRLRSLF 99
+Q+ + K QE +EI RLR ++
Sbjct: 208 AQDKIFKDAHQEALRKEIERLRQVY 232
>Os02g0247100 Similar to BZIP protein BZO2H3 (Fragment)
Length = 269
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 56/85 (65%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ AQRSRVRKLQYI+ELER V LQ E +S + FL Q +L + N LKQR+ +L
Sbjct: 151 RQSAQRSRVRKLQYISELERSVTTLQMEVSALSPRVAFLDHQRSLLTVGNSHLKQRIAAL 210
Query: 75 SQEHLIKRFQQEMFEREIGRLRSLF 99
+Q+ + K QE ++EI RLR ++
Sbjct: 211 AQDKIFKDAHQEALKKEIERLRQVY 235
>Os02g0538900 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 326
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 16/126 (12%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
R+ QRSRVRKLQYIA+LER V +LQ G +++ + L Q L +ENK L++++ SL
Sbjct: 190 RRSGQRSRVRKLQYIADLERTVDSLQNIGADLAVRVASLFQLRNALSMENKQLRRQITSL 249
Query: 75 SQEHLIKRFQQEMFEREIGRLRSLFXXXXXXXXXXXXXGPTHSRSNSRDLDSQFANMSLK 134
Q LIK Q +M ++E RL+ L H R SR + S F S
Sbjct: 250 QQAKLIKDGQTQMLKKETERLKQLSVR--------------HRR--SRSVTSCFEANSFG 293
Query: 135 HGDPNS 140
GDP++
Sbjct: 294 GGDPSA 299
>Os01g0211800 Similar to VirE2-interacting protein VIP1
Length = 330
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 51/77 (66%)
Query: 15 RQYAQRSRVRKLQYIAELERRVQALQTEGVEVSAEMDFLGQQNIMLDLENKALKQRLESL 74
RQ AQRSRVRKLQYI+ELER V +LQTE +S + FL Q +L L N LKQR+ +L
Sbjct: 199 RQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRSLLTLGNSHLKQRIAAL 258
Query: 75 SQEHLIKRFQQEMFERE 91
+Q+ + K E +RE
Sbjct: 259 AQDKIFKDGGTEEGDRE 275
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,755,174
Number of extensions: 106074
Number of successful extensions: 400
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 8
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)