BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0183100 Os12g0183100|AK060732
(486 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0183100 Similar to Branched chain alpha-keto acid dehy... 862 0.0
Os02g0739600 Similar to Pyruvate dehydrogenase E1 component... 152 6e-37
Os06g0246500 Similar to Pyruvate dehydrogenase E1 alpha sub... 148 9e-36
Os04g0119400 Similar to Pyruvate dehydrogenase E1 component... 131 1e-30
>Os12g0183100 Similar to Branched chain alpha-keto acid dehydrogenase E1-alpha
subunit (Fragment)
Length = 486
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/486 (86%), Positives = 421/486 (86%)
Query: 1 MAPWXXXXXXXXXXXXXXXXXXXXXXXXXXCAAPACPWLXXXXXXXXXXXXXXXXXXXDR 60
MAPW CAAPACPWL DR
Sbjct: 1 MAPWRAAAMASSQLARRAARRLLSSQHRRHCAAPACPWLLGSAPPVLAPSPVAAAAAGDR 60
Query: 61 RGFCSVRRFTXXXXXXXXXXXXXXXXXXXXDQAIDFPGGKVSFVAEMNFLPESQRDRINC 120
RGFCSVRRFT DQAIDFPGGKVSFVAEMNFLPESQRDRINC
Sbjct: 61 RGFCSVRRFTGESNAAAAVEEAENGLVAGGDQAIDFPGGKVSFVAEMNFLPESQRDRINC 120
Query: 121 YRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFFEAQRQGRISFYLTSHGEE 180
YRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFFEAQRQGRISFYLTSHGEE
Sbjct: 121 YRVLDDDGRTISGSRFQEVSKELALKMYNEMATLQVMDTIFFEAQRQGRISFYLTSHGEE 180
Query: 181 AINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSN 240
AINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSN
Sbjct: 181 AINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSN 240
Query: 241 RLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEA 300
RLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEA
Sbjct: 241 RLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEA 300
Query: 301 PVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAI 360
PVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAI
Sbjct: 301 PVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAI 360
Query: 361 KEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDED 420
KEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDED
Sbjct: 361 KEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDED 420
Query: 421 ESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTIKKHPADY 480
ESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTIKKHPADY
Sbjct: 421 ESELRNNVRQELLKAIQVAERMPKPPLAELFTDVYDEVPSNLREQERLLRDTIKKHPADY 480
Query: 481 PADVHI 486
PADVHI
Sbjct: 481 PADVHI 486
>Os02g0739600 Similar to Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
Length = 390
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 152/315 (48%), Gaps = 10/315 (3%)
Query: 145 LKMYNEMATLQVM----DTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQY 200
L + +M+ ++ M D+++ +G Y G+EA+ + AA+T D ++ Y
Sbjct: 61 LTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGMEAAITRSDSIITAY 117
Query: 201 REPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVG 260
R+ L RG L + G + +G+ +H+ N++ + Q+P G
Sbjct: 118 RDHCTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGCG 177
Query: 261 AAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQ 320
A++ K K++ +GDG ++G ALN +A+ + P I C NN + + T
Sbjct: 178 LAFAQKYRKEETATFALYGDGAANQGQLFEALNISALWKLPAILVCENNHYGMGTAEWRA 237
Query: 321 FRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRVGHHST 380
+S RG + ++VDG D LAV A A+E AI G PI++E TYR HS
Sbjct: 238 AKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHAIANG-PIVLEMDTYRYHGHSM 294
Query: 381 SDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKAIQVAE 440
SD + YR DEI R RDPI R RK + + + ++ +R+E+ AI A+
Sbjct: 295 SDPGSTYRTRDEISGVRQERDPIERVRKLILAHDLATAAELKDMEKEIRKEVDDAIAKAK 354
Query: 441 RMPKPPLAELFTDVY 455
P P +ELFT+VY
Sbjct: 355 ESPMPDTSELFTNVY 369
>Os06g0246500 Similar to Pyruvate dehydrogenase E1 alpha subunit (EC 1.2.4.1)
Length = 398
Score = 148 bits (373), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 139/278 (50%), Gaps = 3/278 (1%)
Query: 178 GEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHY 237
G+EA+ + AA T D ++ YR+ L RG L + G + +G+ +H
Sbjct: 103 GQEAVAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGGCSRGKGGSMHL 162
Query: 238 GSNRLNYFTVSSPIATQLPHAVGAAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAV 297
N++ + Q+P G A++ + K+ A +GDG ++G ALN AA+
Sbjct: 163 YKKDANFYGGHGIVGAQVPLGCGLAFAQRYRKEAAVTFDLYGDGAANQGQLFEALNMAAL 222
Query: 298 MEAPVIFFCRNNGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTARE 357
+ PV+ C NN + + T +S RG + ++VDG D LAV A A++
Sbjct: 223 WKLPVVLVCENNHYGMGTAEWRASKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKQ 280
Query: 358 MAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWC 417
A++ G PI++E TYR HS SD + YR DEI R RDPI R RK + + +
Sbjct: 281 HALENG-PIILEMDTYRYHGHSMSDPGSTYRTRDEIAGIRQERDPIERVRKLLLAHDFAT 339
Query: 418 DEDESELRNNVRQELLKAIQVAERMPKPPLAELFTDVY 455
++ ++ +R+++ AI A+ P P +ELFT+VY
Sbjct: 340 TQELKDMEKEIRKQVDTAIAKAKESPMPDPSELFTNVY 377
>Os04g0119400 Similar to Pyruvate dehydrogenase E1 component, alpha subunit
Length = 425
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 151/329 (45%), Gaps = 12/329 (3%)
Query: 139 VSKELALKMYNEMATLQVMDTIFFEAQRQGRI-SFYLTSHGEEAINIASAAALTIDDIVL 197
V++E AL++Y +M ++ + + + +G++ F +G+EA++ L D V+
Sbjct: 73 VTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVV 132
Query: 198 PQYREPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPH 257
YR+ L +G + + FG +G+ +H S N + I +P
Sbjct: 133 STYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPV 192
Query: 258 AVGAAYS-------LKMDKKDACAIT--YFGDGGTSEGDFHAALNFAAVMEAPVIFFCRN 308
A GAA++ LK D +T +FGDG + G F LN A + + P++F N
Sbjct: 193 ATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVEN 252
Query: 309 NGWAISTPTSEQFRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILV 368
N WAI +G A+GM + VDG D L V A E A + P LV
Sbjct: 253 NLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLV 312
Query: 369 EALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNV 428
E TYR HS +D RP DE H+ ARDPI+ +K++ + + + +
Sbjct: 313 ECETYRFRGHSLADPDELRRP-DEKSHY-AARDPITALKKYIIEQNLATESELKSIEKKI 370
Query: 429 RQELLKAIQVAERMPKPPLAELFTDVYDE 457
+ +A++ A+ P PP ++L +V+ +
Sbjct: 371 DDVVEEAVEFADASPLPPRSQLLENVFSD 399
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,081,205
Number of extensions: 626539
Number of successful extensions: 1296
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1287
Number of HSP's successfully gapped: 4
Length of query: 486
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 381
Effective length of database: 11,553,331
Effective search space: 4401819111
Effective search space used: 4401819111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)