Os02g0739600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A).
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Os02g0739600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.48 | 0.172 | 14 | -0.437 | 0.588 | -0.816 | 0.292 | 0.138 | -0.217 | 8.29 | 21.8 | 1446 | -- | -- |
| 13.52 | 0.171 | 14 | -0.472 | 0.59 | -0.823 | 0.286 | -- | -0.225 | 8.36 | 21.73 | 1511 | -- | -- |
| 13.74 | 0.173 | 14 | -0.429 | 0.587 | -0.815 | -- | 0.134 | -0.217 | 8.33 | 21.7 | 1445 | -- | -- |
| 13.77 | 0.173 | 14 | -0.464 | 0.589 | -0.822 | -- | -- | -0.226 | 8.41 | 21.7 | 1521 | -- | -- |
| 27.74 | 0.245 | 14 | -0.481 | -- | -0.814 | -- | 0.124 | -0.199 | -- | 21.9 | 796 | -- | -- |
| 34.89 | 0.277 | 14 | -0.813 | 0.588 | -- | 0.257 | -- | -0.475 | 8.48 | -- | -- | -- | -- |
| 35.1 | 0.277 | 14 | -0.804 | 0.587 | -- | -- | -- | -0.475 | 8.53 | -- | -- | -- | -- |
| 27.71 | 0.245 | 14 | -0.525 | -- | -0.802 | -- | -- | -0.218 | -- | 21.81 | 775 | -- | -- |
| 17.88 | 0.197 | 13.9 | -- | 0.572 | -0.991 | -- | -- | -0.135 | 8.08 | 21.4 | 2605 | -- | -- |
| 54.41 | 0.345 | 14 | -0.802 | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
| 52.15 | 0.338 | 14 | -- | 0.584 | -- | -- | -- | -0.386 | 8.63 | -- | -- | -- | -- |
| 33.25 | 0.269 | 13.9 | -- | -- | -1.03 | -- | -- | -0.102 | -- | 21.5 | 2181 | -- | -- |
| 71.38 | 0.394 | 14 | -- | -- | -- | -- | -- | -0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 5 | 13.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 28 | 13.80 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 37 | 13.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 114 | 14.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 134 | 14.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 199 | 14.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 298 | 14.55 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 352 | 14.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 583 | 15.19 | temperature | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 960 | 16.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 974 | 16.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 986 | 16.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |