BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0739600 Os02g0739600|AK062242
(390 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0739600 Similar to Pyruvate dehydrogenase E1 component... 785 0.0
Os06g0246500 Similar to Pyruvate dehydrogenase E1 alpha sub... 668 0.0
Os04g0119400 Similar to Pyruvate dehydrogenase E1 component... 259 3e-69
Os12g0183100 Similar to Branched chain alpha-keto acid dehy... 152 4e-37
>Os02g0739600 Similar to Pyruvate dehydrogenase E1 component alpha subunit,
mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
Length = 390
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/390 (97%), Positives = 379/390 (97%)
Query: 1 MAAAILLRRVPPXXXXXXXXXXXRSISDSTAPLTIETSVPFTSHIVDPPSRDVTTTPAEL 60
MAAAILLRRVPP RSISDSTAPLTIETSVPFTSHIVDPPSRDVTTTPAEL
Sbjct: 1 MAAAILLRRVPPARAQATALIAARSISDSTAPLTIETSVPFTSHIVDPPSRDVTTTPAEL 60
Query: 61 LTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRSDSIITAYRDH 120
LTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRSDSIITAYRDH
Sbjct: 61 LTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRSDSIITAYRDH 120
Query: 121 CTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAF 180
CTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAF
Sbjct: 121 CTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAF 180
Query: 181 AQKYRKEETATFALYGDGAANQGQLFEALNISALWKLPAILVCENNHYGMGTAEWRAAKS 240
AQKYRKEETATFALYGDGAANQGQLFEALNISALWKLPAILVCENNHYGMGTAEWRAAKS
Sbjct: 181 AQKYRKEETATFALYGDGAANQGQLFEALNISALWKLPAILVCENNHYGMGTAEWRAAKS 240
Query: 241 PAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHAIANGPIVLEMDTYRYHGHSMSDPGST 300
PAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHAIANGPIVLEMDTYRYHGHSMSDPGST
Sbjct: 241 PAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHAIANGPIVLEMDTYRYHGHSMSDPGST 300
Query: 301 YRTRDEISGVRQERDPIERVRKLILAHDLATAAELKDMEKEIRKEVDDAIAKAKESPMPD 360
YRTRDEISGVRQERDPIERVRKLILAHDLATAAELKDMEKEIRKEVDDAIAKAKESPMPD
Sbjct: 301 YRTRDEISGVRQERDPIERVRKLILAHDLATAAELKDMEKEIRKEVDDAIAKAKESPMPD 360
Query: 361 TSELFTNVYVKGFGVESFGADRKELRATLP 390
TSELFTNVYVKGFGVESFGADRKELRATLP
Sbjct: 361 TSELFTNVYVKGFGVESFGADRKELRATLP 390
>Os06g0246500 Similar to Pyruvate dehydrogenase E1 alpha subunit (EC 1.2.4.1)
Length = 398
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/396 (80%), Positives = 341/396 (86%), Gaps = 7/396 (1%)
Query: 2 AAAILLRRV-------PPXXXXXXXXXXXRSISDSTAPLTIETSVPFTSHIVDPPSRDVT 54
AA +LLRR+ R +SDST PLTIETSVP+ SHIVDPP R+V
Sbjct: 3 AAVVLLRRLRGVTAAPRRAAAALPLTTSVRGVSDSTEPLTIETSVPYKSHIVDPPPREVA 62
Query: 55 TTPAELLTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRSDSII 114
TT EL TFFRDMS MRR EIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAA TR+D+II
Sbjct: 63 TTARELATFFRDMSAMRRAEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAATTRADAII 122
Query: 115 TAYRDHCTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPL 174
TAYRDHC YLARGGDL + FAELMGR+ GCSRGKGGSMH YKKDANFYGGHGIVGAQVPL
Sbjct: 123 TAYRDHCAYLARGGDLAALFAELMGRRGGCSRGKGGSMHLYKKDANFYGGHGIVGAQVPL 182
Query: 175 GCGLAFAQKYRKEETATFALYGDGAANQGQLFEALNISALWKLPAILVCENNHYGMGTAE 234
GCGLAFAQ+YRKE TF LYGDGAANQGQLFEALN++ALWKLP +LVCENNHYGMGTAE
Sbjct: 183 GCGLAFAQRYRKEAAVTFDLYGDGAANQGQLFEALNMAALWKLPVVLVCENNHYGMGTAE 242
Query: 235 WRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHAIANGPIVLEMDTYRYHGHSM 294
WRA+KSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAK+HA+ NGPI+LEMDTYRYHGHSM
Sbjct: 243 WRASKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKQHALENGPIILEMDTYRYHGHSM 302
Query: 295 SDPGSTYRTRDEISGVRQERDPIERVRKLILAHDLATAAELKDMEKEIRKEVDDAIAKAK 354
SDPGSTYRTRDEI+G+RQERDPIERVRKL+LAHD AT ELKDMEKEIRK+VD AIAKAK
Sbjct: 303 SDPGSTYRTRDEIAGIRQERDPIERVRKLLLAHDFATTQELKDMEKEIRKQVDTAIAKAK 362
Query: 355 ESPMPDTSELFTNVYVKGFGVESFGADRKELRATLP 390
ESPMPD SELFTNVYV G+ESFG DRK +R LP
Sbjct: 363 ESPMPDPSELFTNVYVNDCGLESFGVDRKVVRTVLP 398
>Os04g0119400 Similar to Pyruvate dehydrogenase E1 component, alpha subunit
Length = 425
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 198/345 (57%), Gaps = 18/345 (5%)
Query: 55 TTPAELLTFFRDMSVMRRME-IAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRSDSI 113
T E L + DM + R E + A Y+ K+ GF HLY+GQEAV+ G + ++D +
Sbjct: 73 VTREEALELYEDMVLGRIFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLNQADCV 131
Query: 114 ITAYRDHCTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVP 173
++ YRDH L++G S AEL G+ GC RG+GGSMH + + N GG +G +P
Sbjct: 132 VSTYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIP 191
Query: 174 LGCGLAFAQKYRKEET---------ATFALYGDGAANQGQLFEALNISALWKLPAILVCE 224
+ G AFA KYR E T A +GDG N GQ FE LN++ LWKLP + V E
Sbjct: 192 VATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVE 251
Query: 225 NNHYGMGTAEWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHA-IANGPIV 281
NN + +G + RA P YK+G +PG+ VDGMDVL V++ K A E A GP +
Sbjct: 252 NNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTL 311
Query: 282 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLILAHDLATAAELKDMEKE 341
+E +TYR+ GHS++DP R DE S RDPI ++K I+ +LAT +ELK +EK+
Sbjct: 312 VECETYRFRGHSLADP-DELRRPDEKSHY-AARDPITALKKYIIEQNLATESELKSIEKK 369
Query: 342 IRKEVDDAIAKAKESPMPDTSELFTNVYV--KGFGVESFGADRKE 384
I V++A+ A SP+P S+L NV+ KGFG+ G R E
Sbjct: 370 IDDVVEEAVEFADASPLPPRSQLLENVFSDPKGFGIGPDGKYRCE 414
>Os12g0183100 Similar to Branched chain alpha-keto acid dehydrogenase E1-alpha
subunit (Fragment)
Length = 486
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 152/315 (48%), Gaps = 10/315 (3%)
Query: 61 LTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGMEAAITRSDSIITAY 117
L + +M+ ++ M D+++ +G Y G+EA+ + AA+T D ++ Y
Sbjct: 145 LKMYNEMATLQVM----DTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQY 200
Query: 118 RDHCTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGCG 177
R+ L RG L + G + +G+ +H+ N++ + Q+P G
Sbjct: 201 REPGVLLWRGFTLQEFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVG 260
Query: 178 LAFAQKYRKEETATFALYGDGAANQGQLFEALNISALWKLPAILVCENNHYGMGTAEWRA 237
A++ K K++ +GDG ++G ALN +A+ + P I C NN + + T
Sbjct: 261 AAYSLKMDKKDACAITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQ 320
Query: 238 AKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHAIANG-PIVLEMDTYRYHGHSM 294
+S RG + ++VDG D LAV A A+E AI G PI++E TYR HS
Sbjct: 321 FRSDGAVIRGQAYGMRSIRVDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRVGHHST 380
Query: 295 SDPGSTYRTRDEISGVRQERDPIERVRKLILAHDLATAAELKDMEKEIRKEVDDAIAKAK 354
SD + YR DEI R RDPI R RK + + + ++ +R+E+ AI A+
Sbjct: 381 SDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKAIQVAE 440
Query: 355 ESPMPDTSELFTNVY 369
P P +ELFT+VY
Sbjct: 441 RMPKPPLAELFTDVY 455
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,376,491
Number of extensions: 581188
Number of successful extensions: 1313
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1307
Number of HSP's successfully gapped: 4
Length of query: 390
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 287
Effective length of database: 11,657,759
Effective search space: 3345776833
Effective search space used: 3345776833
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)