Os04g0119400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate dehydrogenase E1 component, alpha subunit.
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Os04g0119400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate dehydrogenase E1 component, alpha subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.08 | 0.552 | 11 | 0.261 | 2.68 | 1.24 | 0.592 | -1.7 | 1.01 | 23 | 89.21 | 261 | -- | -- |
| 143.46 | 0.558 | 11 | 0.226 | 2.69 | 1.2 | 0.627 | -- | 1.02 | 22.9 | 88.09 | 261 | -- | -- |
| 139.34 | 0.55 | 11 | 0.226 | 2.68 | 1.2 | -- | -1.46 | 1 | 23 | 88.27 | 261 | -- | -- |
| 143.62 | 0.558 | 11 | 0.165 | 2.64 | 1.1 | -- | -- | 0.98 | 22.9 | 86.62 | 239 | -- | -- |
| 364.29 | 0.889 | 10.9 | 0.311 | -- | 2.14 | -- | -0.611 | 1 | -- | 68.59 | 2 | -- | -- |
| 170.58 | 0.612 | 11 | 0.329 | 2.73 | -- | 0.465 | -- | 0.808 | 23.8 | -- | -- | -- | -- |
| 171.52 | 0.613 | 11 | 0.31 | 2.73 | -- | -- | -- | 0.806 | 23.8 | -- | -- | -- | -- |
| 365.63 | 0.891 | 10.9 | 0.308 | -- | 2.11 | -- | -- | 0.998 | -- | 68.72 | 2 | -- | -- |
| 144.38 | 0.56 | 11 | -- | 2.64 | 1.11 | -- | -- | 0.967 | 22.9 | 86.43 | 239 | -- | -- |
| 640.51 | 1.18 | 11 | 0.39 | -- | -- | -- | -- | 0.841 | -- | -- | -- | -- | -- |
| 174.04 | 0.617 | 11 | -- | 2.73 | -- | -- | -- | 0.772 | 23.8 | -- | -- | -- | -- |
| 368.13 | 0.894 | 11 | -- | -- | 2.12 | -- | -- | 0.965 | -- | 68.8 | 2 | -- | -- |
| 644.52 | 1.18 | 11 | -- | -- | -- | -- | -- | 0.797 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.05 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 125.05 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 126.83 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 12 | 128.92 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 15 | 129.03 | humidity | 80.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 17 | 129.20 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 19 | 129.67 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 20 | 129.67 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 27 | 130.08 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 28 | 130.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 46 | 130.86 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 1 | 10 |
| 59 | 131.75 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 1 | 15 |
| 69 | 132.01 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 74 | 132.10 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 1 | 22 |
| 80 | 132.41 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 90 | 132.86 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 103 | 133.37 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 120 | 133.77 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 145 | 134.48 | humidity | 90.0 | 30 | > th | dose independent | rect. | 3 | 7 |
| 181 | 135.24 | humidity | 90.0 | 30 | > th | dose independent | sin | 4 | NA |
| 185 | 135.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 202 | 135.49 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 214 | 135.63 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 218 | 135.66 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 10 |
| 228 | 135.83 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 242 | 136.07 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 340 | 137.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 24 | 7 |
| 351 | 137.15 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 365 | 137.26 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 375 | 137.35 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 6 |
| 408 | 137.53 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 447 | 137.69 | humidity | 90.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 468 | 137.82 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 472 | 137.83 | radiation | 1.0 | 270 | > th | dose independent | rect. | 4 | 11 |
| 518 | 138.02 | humidity | 90.0 | 30 | > th | dose independent | rect. | 3 | 13 |
| 521 | 138.03 | humidity | 90.0 | 30 | > th | dose independent | rect. | 3 | 11 |
| 527 | 138.04 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 572 | 138.24 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 611 | 138.39 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 8 |
| 635 | 138.48 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 682 | 138.65 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 765 | 138.94 | humidity | 90.0 | 270 | < th | dose independent | rect. | 19 | 20 |
| 831 | 139.26 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 833 | 139.26 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 835 | 139.26 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 887 | 139.26 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 889 | 139.26 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 891 | 139.26 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 947 | 139.27 | humidity | 90.0 | 90 | > th | dose independent | rect. | 1 | 20 |