BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0119400 Os04g0119400|AK069299
(425 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G01090.1 | chr1:47705-49166 REVERSE LENGTH=429 641 0.0
AT1G59900.1 | chr1:22051368-22053660 FORWARD LENGTH=390 248 4e-66
AT1G24180.1 | chr1:8560777-8563382 REVERSE LENGTH=394 239 2e-63
AT5G09300.1 | chr5:2884282-2886797 REVERSE LENGTH=473 126 2e-29
AT1G21400.1 | chr1:7493492-7496240 FORWARD LENGTH=473 114 1e-25
AT5G34780.1 | chr5:12961682-12963892 REVERSE LENGTH=366 79 4e-15
>AT1G01090.1 | chr1:47705-49166 REVERSE LENGTH=429
Length = 428
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/353 (85%), Positives = 327/353 (92%), Gaps = 3/353 (0%)
Query: 73 VTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVV 132
+T+EE LELYEDM+LGR FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL ++D VV
Sbjct: 79 ITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVV 138
Query: 133 STYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPV 192
STYRDHVHALSKGV AR+VM+ELFGK TGCCRGQGGSMHMFS+ HN+LGGFAFIGEGIPV
Sbjct: 139 STYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPV 198
Query: 193 ATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVEN 252
ATGAAF++KYR EVLKQ D DVT+AFFGDGTCNNGQFFECLNMA L+KLPI+FVVEN
Sbjct: 199 ATGAAFSSKYRREVLKQ---DCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVEN 255
Query: 253 NLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLV 312
NLWAIGMSHLRATSDPEI+KKGPAFGMPGVHVDGMDVLKVREVAKEA+ RARRGEGPTLV
Sbjct: 256 NLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLV 315
Query: 313 ECETYRFRGHSLADPDELRRPDEKSHYAARDPITALKKYIIEQNLATESELKSIEKKIDD 372
ECETYRFRGHSLADPDELR EK+ YAARDPI ALKKY+IE LA E+ELKSIEKKID+
Sbjct: 316 ECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIEKKIDE 375
Query: 373 VVEEAVEFADASPLPPRSQLLENVFSDPKGFGIGPDGKYRCEDPLFTQGTAQV 425
+VEEAVEFADASP P RSQLLENVF+DPKGFGIGPDG+YRCEDP FT+GTAQV
Sbjct: 376 LVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAQV 428
>AT1G59900.1 | chr1:22051368-22053660 FORWARD LENGTH=390
Length = 389
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 137/343 (39%), Positives = 194/343 (56%), Gaps = 21/343 (6%)
Query: 74 TREEALELYEDMVLGRIFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLNQADCVV 132
+ +E L+ + M L R E + A Y+ K+ GF HLY+GQEAV+ G + + D ++
Sbjct: 55 SSQELLDFFRTMALMRRME-IAADSLYKAKLIRGFCHLYDGQEAVAIGMEAAITKKDAII 113
Query: 133 STYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPV 192
+ YRDH L +G V +EL G+ GC +G+GGSMH + + + GG +G +P+
Sbjct: 114 TAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGGHGIVGAQVPL 173
Query: 193 ATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVEN 252
G AFA KY E VT A +GDG N GQ FE LN++ LW LP + V EN
Sbjct: 174 GCGIAFAQKYNKEEA---------VTFALYGDGAANQGQLFEALNISALWDLPAILVCEN 224
Query: 253 NLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLV 312
N + +G + RA P YK+G +PG+ VDGMD V++ K A + A +GP ++
Sbjct: 225 NHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDAFAVKQACKFAKQHALE-KGPIIL 281
Query: 313 ECETYRFRGHSLADP-DELRRPDEKSHY-AARDPITALKKYIIEQNLATESELKSIEKKI 370
E +TYR+ GHS++DP R DE S RDPI +KK ++ +LATE ELK +EK+I
Sbjct: 282 EMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIKKLVLSHDLATEKELKDMEKEI 341
Query: 371 DDVVEEAVEFADASPLPPRSQLLENVFSDPKGFG---IGPDGK 410
V++A+ A P+P S+L NV+ KGFG GPD K
Sbjct: 342 RKEVDDAIAKAKDCPMPEPSELFTNVYV--KGFGTESFGPDRK 382
>AT1G24180.1 | chr1:8560777-8563382 REVERSE LENGTH=394
Length = 393
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 187/328 (57%), Gaps = 16/328 (4%)
Query: 73 VTREEALELYEDMVLGRIFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLNQADCV 131
+ EE L + DM R E + A Y+ K+ GF HLY+GQEA++ G + + D +
Sbjct: 58 TSSEEILAFFRDMARMRRME-IAADSLYKAKLIRGFCHLYDGQEALAVGMEAAITKKDAI 116
Query: 132 VSTYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIP 191
+++YRDH + +G +EL G+ TGC G+GGSMH + + + GG +G IP
Sbjct: 117 ITSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHGIVGAQIP 176
Query: 192 VATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVE 251
+ G AFA KY + VT A +GDG N GQ FE LN++ LW LP + V E
Sbjct: 177 LGCGLAFAQKYNKDEA---------VTFALYGDGAANQGQLFEALNISALWDLPAILVCE 227
Query: 252 NNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTL 311
NN + +G + R+ P +K+G +PG+ VDGMD L V++ K A E A + GP +
Sbjct: 228 NNHYGMGTATWRSAKSPAYFKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPII 284
Query: 312 VECETYRFRGHSLADP-DELRRPDEKSHY-AARDPITALKKYIIEQNLATESELKSIEKK 369
+E +TYR+ GHS++DP R DE S RDPI ++K ++ ++ATE ELK +EK+
Sbjct: 285 LEMDTYRYHGHSMSDPGSTYRTRDEISGVRQVRDPIERVRKLLLTHDIATEKELKDMEKE 344
Query: 370 IDDVVEEAVEFADASPLPPRSQLLENVF 397
I V++AV A SP+P S+L N++
Sbjct: 345 IRKEVDDAVAQAKESPIPDASELFTNMY 372
>AT5G09300.1 | chr5:2884282-2886797 REVERSE LENGTH=473
Length = 472
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/345 (26%), Positives = 153/345 (44%), Gaps = 16/345 (4%)
Query: 57 VLPGNKXXXXXXXXXXVTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEA 116
VL N V+ E A+++Y DMV +I +++ + +G++ F G+EA
Sbjct: 109 VLDDNGQLITNSQFVQVSEEVAVKIYSDMVTLQIMDNIFYEAQRQGRL-SFYATAIGEEA 167
Query: 117 VSTGFIKLLNQADCVVSTYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEP 176
++ L D + YR+ L +G + + FG + +G+ +H S
Sbjct: 168 INIASAAALTPQDVIFPQYREPGVLLWRGFTLQEFANQCFGNKSDYGKGRQMPVHYGSNK 227
Query: 177 HNLLGGFAFIGEGIPVATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECL 236
N A I +P A GAA++ LK D VT +FGDG + G F L
Sbjct: 228 LNYFTVSATIATQLPNAVGAAYS-------LKMDKKDACAVT--YFGDGGTSEGDFHAAL 278
Query: 237 NMAQLWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVA 296
N+A + + P++F+ NN WAI + KG A+G+ + VDG D L +
Sbjct: 279 NIAAVMEAPVLFICRNNGWAISTPTSDQFRSDGVVVKGRAYGIRSIRVDGNDALAMYSAV 338
Query: 297 KEAIERARRGEGPTLVECETYRFRGHSLADPDELRRPDEKSHY--AARDPITALKKYIIE 354
A E A R + P L+E TYR HS +D R + + AR+P++ + +I
Sbjct: 339 HTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSAGEIEWWNKARNPLSRFRTWIES 398
Query: 355 QNLATESELKSIEKKIDDVVEEAVEFADASPLPPRSQLLENVFSD 399
++ + +I + EA+ A+ + P L+N+FSD
Sbjct: 399 NGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPN----LQNMFSD 439
>AT1G21400.1 | chr1:7493492-7496240 FORWARD LENGTH=473
Length = 472
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 145/327 (44%), Gaps = 12/327 (3%)
Query: 73 VTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVV 132
V+ + A+ +YE M ++ + + + +G++ F G+EA++ L+ D V+
Sbjct: 125 VSEKLAVRMYEQMATLQVMDHIFYEAQRQGRI-SFYLTSVGEEAINIASAAALSPDDVVL 183
Query: 133 STYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPV 192
YR+ L +G + FG +G+ +H S N + I +P
Sbjct: 184 PQYREPGVLLWRGFTLEEFANQCFGNKADYGKGRQMPIHYGSNRLNYFTISSPIATQLPQ 243
Query: 193 ATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVEN 252
A G ++ LK + VT F GDG + G F LN A + + P+VF+ N
Sbjct: 244 AAGVGYS-------LKMDKKNACTVT--FIGDGGTSEGDFHAGLNFAAVMEAPVVFICRN 294
Query: 253 NLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLV 312
N WAI I KG A+G+ + VDG D L V + A E A + P L+
Sbjct: 295 NGWAISTHISEQFRSDGIVVKGQAYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLI 354
Query: 313 ECETYRFRGHSLA-DPDELRRPDEKSHYA-ARDPITALKKYIIEQNLATESELKSIEKKI 370
E TYR HS + D + R DE ++ +R+P+ +K++ + +E + +
Sbjct: 355 EMMTYRVGHHSTSDDSTKYRAADEIQYWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNA 414
Query: 371 DDVVEEAVEFADASPLPPRSQLLENVF 397
+ +A++ A+ P ++L +V+
Sbjct: 415 RKQLLQAIQAAEKWEKQPLTELFNDVY 441
>AT5G34780.1 | chr5:12961682-12963892 REVERSE LENGTH=366
Length = 365
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 2/181 (1%)
Query: 219 LAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFG 278
+ F GDG + G F LN A + + P+VF+ NN WAI I KG A+G
Sbjct: 31 VTFIGDGGTSEGDFHAGLNFAAVMEAPVVFICRNNGWAISTHISEQFRSDGIVVKGQAYG 90
Query: 279 MPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELRRPDEKS 337
+ + VDG D L V A E A + P L+E YR HS + D + R DE
Sbjct: 91 IRSIRVDGNDALAVYSAVCSAREMAVTEQRPVLIEMMIYRVGHHSTSDDSTKYRAADEIQ 150
Query: 338 HYA-ARDPITALKKYIIEQNLATESELKSIEKKIDDVVEEAVEFADASPLPPRSQLLENV 396
++ +R+ + +K + + +E + + + +A++ A+ P ++L +V
Sbjct: 151 YWKMSRNSVNRFRKSVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTELFNDV 210
Query: 397 F 397
+
Sbjct: 211 Y 211
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,751,853
Number of extensions: 368356
Number of successful extensions: 846
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 835
Number of HSP's successfully gapped: 6
Length of query: 425
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 324
Effective length of database: 8,337,553
Effective search space: 2701367172
Effective search space used: 2701367172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)