Os06g0246500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate dehydrogenase E1 alpha subunit (EC 1.2.4.1).
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Os06g0246500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate dehydrogenase E1 alpha subunit (EC 1.2.4.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.29 | 0.544 | 6.41 | 1.47 | 1.56 | -1.5 | -0.0262 | -0.917 | 0.185 | 7.01 | 49.99 | 1344 | -- | -- |
| 135.34 | 0.542 | 6.42 | 1.36 | 1.57 | -1.58 | -0.0599 | -- | 0.16 | 7.1 | 50.89 | 1305 | -- | -- |
| 133.45 | 0.538 | 6.4 | 1.52 | 1.59 | -1.57 | -- | -1.14 | 0.187 | 7.23 | 52.93 | 1274 | -- | -- |
| 135.26 | 0.542 | 6.41 | 1.36 | 1.58 | -1.65 | -- | -- | 0.163 | 7.24 | 50.8 | 1275 | -- | -- |
| 261.21 | 0.753 | 6.45 | 1.49 | -- | -1.64 | -- | -0.846 | 0.203 | -- | 52.13 | 1346 | -- | -- |
| 194.77 | 0.654 | 6.4 | 1.45 | 1.63 | -- | 0.17 | -- | 0.231 | 6.57 | -- | -- | -- | -- |
| 194.84 | 0.654 | 6.4 | 1.45 | 1.63 | -- | -- | -- | 0.23 | 6.59 | -- | -- | -- | -- |
| 262.33 | 0.754 | 6.45 | 1.39 | -- | -1.7 | -- | -- | 0.183 | -- | 51.99 | 1349 | -- | -- |
| 183.26 | 0.631 | 6.45 | -- | 1.58 | -1.76 | -- | -- | 0.0181 | 7.17 | 42.98 | 1286 | -- | -- |
| 333.53 | 0.853 | 6.43 | 1.49 | -- | -- | -- | -- | 0.263 | -- | -- | -- | -- | -- |
| 250.29 | 0.74 | 6.44 | -- | 1.65 | -- | -- | -- | 0.0686 | 6.54 | -- | -- | -- | -- |
| 312.4 | 0.823 | 6.48 | -- | -- | -1.85 | -- | -- | 0.0359 | -- | 23.21 | 1344 | -- | -- |
| 392.09 | 0.924 | 6.47 | -- | -- | -- | -- | -- | 0.0981 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.35 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 2 | 135.53 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 5 | 135.99 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 10 | 136.18 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 21 |
| 11 | 136.21 | humidity | 50 | 1440 | > th | dose dependent | rect. | 3 | 21 |
| 16 | 136.33 | humidity | 50 | 1440 | > th | dose dependent | rect. | 5 | 20 |
| 58 | 136.89 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 62 | 136.95 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 79 | 137.16 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 21 |
| 84 | 137.24 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 113 | 137.43 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 128 | 137.55 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 134 | 137.56 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 144 | 137.63 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 146 | 137.64 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 171 | 137.85 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 176 | 137.87 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 247 | 138.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 249 | 138.22 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 259 | 138.26 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 262 | 138.28 | wind | 7 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 362 | 138.83 | humidity | 90 | 1440 | < th | dose dependent | sin | 17 | NA |
| 365 | 138.85 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 366 | 138.85 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 5 |
| 385 | 138.95 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 411 | 139.10 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 3 |
| 446 | 139.23 | wind | 3 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 468 | 139.29 | wind | 3 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 518 | 139.45 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 564 | 139.67 | humidity | 80 | 1440 | < th | dose dependent | sin | 13 | NA |
| 635 | 139.97 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 692 | 140.13 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 715 | 140.22 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 723 | 140.23 | wind | 3 | 43200 | > th | dose dependent | sin | 7 | NA |
| 814 | 140.59 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 10 |
| 816 | 140.62 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 18 |
| 820 | 140.62 | radiation | 40 | 1440 | < th | dose dependent | rect. | 14 | 18 |
| 864 | 140.77 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 901 | 140.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 910 | 140.88 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 916 | 140.89 | radiation | 40 | 1440 | < th | dose dependent | sin | 13 | NA |
| 924 | 140.90 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 932 | 140.92 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 947 | 140.95 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 962 | 140.98 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 972 | 141.00 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 13 |
| 977 | 141.00 | radiation | 1 | 1440 | > th | dose dependent | sin | 13 | NA |