BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0127600 Os12g0127600|Os12g0127600
(1183 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0127600 Similar to WRKY transcription factor 57 2126 0.0
Os11g0130800 Conserved hypothetical protein 701 0.0
Os12g0102300 Similar to WRKY transcription factor 57 130 4e-30
Os11g0102700 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 127 7e-29
Os01g0812050 Conserved hypothetical protein 109 1e-23
Os12g0103450 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 97 7e-20
Os07g0472300 Conserved hypothetical protein 68 4e-11
>Os12g0127600 Similar to WRKY transcription factor 57
Length = 1183
Score = 2126 bits (5508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1054/1183 (89%), Positives = 1054/1183 (89%)
Query: 1 MRGGQGEVSSRFSPLLDPRFXXXXXXXXXXXXXRASDSPSATRLKSHEFTAEFTGFGHNF 60
MRGGQGEVSSRFSPLLDPRF RASDSPSATRLKSHEFTAEFTGFGHNF
Sbjct: 1 MRGGQGEVSSRFSPLLDPRFPPLCWLLPLECPCRASDSPSATRLKSHEFTAEFTGFGHNF 60
Query: 61 AGVSMAARLGSVTLAKCANETVTYGAWKLKTRWMSFYGYRGSFYDFSDCYPSISTDGEIL 120
AGVSMAARLGSVTLAKCANETVTYGAWKLKTRWMSFYGYRGSFYDFSDCYPSISTDGEIL
Sbjct: 61 AGVSMAARLGSVTLAKCANETVTYGAWKLKTRWMSFYGYRGSFYDFSDCYPSISTDGEIL 120
Query: 121 TSNLFQAQPTFYLRVKFKKIYMAFGANDIVLHIKRLMXXXXXXXXXXXXXXXXXXXXXXX 180
TSNLFQAQPTFYLRVKFKKIYMAFGANDIVLHIKRLM
Sbjct: 121 TSNLFQAQPTFYLRVKFKKIYMAFGANDIVLHIKRLMLCPSLFNFLLSSSPVFLLTALLL 180
Query: 181 XXXXSYGEPAVLVLGENQQTLSFKSKISITDCSIDKVETVAVEEHLDKTTTSNEVYVRER 240
SYGEPAVLVLGENQQTLSFKSKISITDCSIDKVETVAVEEHLDKTTTSNEVYVRER
Sbjct: 181 GALLSYGEPAVLVLGENQQTLSFKSKISITDCSIDKVETVAVEEHLDKTTTSNEVYVRER 240
Query: 241 NFEGNIHDTHWEEKNGTYMTVDTALNEEIHTKDGTSDYDLQDTHREGKGITSVETDTVPC 300
NFEGNIHDTHWEEKNGTYMTVDTALNEEIHTKDGTSDYDLQDTHREGKGITSVETDTVPC
Sbjct: 241 NFEGNIHDTHWEEKNGTYMTVDTALNEEIHTKDGTSDYDLQDTHREGKGITSVETDTVPC 300
Query: 301 VAPSSFAYSGVTVETEDVGENSKKNDELQELGSINPESDNNKVQYQYQLGEFMSSCWEPV 360
VAPSSFAYSGVTVETEDVGENSKKNDELQELGSINPESDNNKVQYQYQLGEFMSSCWEPV
Sbjct: 301 VAPSSFAYSGVTVETEDVGENSKKNDELQELGSINPESDNNKVQYQYQLGEFMSSCWEPV 360
Query: 361 MRQEPQDACSDSESDLTESSPDASMTDIIPMLEELHPLIDLQTGHPSLVSRXXXXXXXXX 420
MRQEPQDACSDSESDLTESSPDASMTDIIPMLEELHPLIDLQTGHPSLVSR
Sbjct: 361 MRQEPQDACSDSESDLTESSPDASMTDIIPMLEELHPLIDLQTGHPSLVSRDNLNTSSDD 420
Query: 421 XXXXXXXXXXXXXXNQLEGKIDDFANWKDVIDLNYLDMDNNSKLEGMMDLQRAKNILKFE 480
NQLEGKIDDFANWKDVIDLNYLDMDNNSKLEGMMDLQRAKNILKFE
Sbjct: 421 DEDDLEEEDASTDENQLEGKIDDFANWKDVIDLNYLDMDNNSKLEGMMDLQRAKNILKFE 480
Query: 481 LDKRLMDLQAADAVQKMEEASRFRVQVPSISTGRQNPFDSSNGSDEIIELPHVPDSAPSC 540
LDKRLMDLQAADAVQKMEEASRFRVQVPSISTGRQNPFDSSNGSDEIIELPHVPDSAPSC
Sbjct: 481 LDKRLMDLQAADAVQKMEEASRFRVQVPSISTGRQNPFDSSNGSDEIIELPHVPDSAPSC 540
Query: 541 LLPRKNLFDLAVNQNMAHDSPLQETWTPLSYFSARRHRKHGNLYVRHSTSLHHNSFKLEK 600
LLPRKNLFDLAVNQNMAHDSPLQETWTPLSYFSARRHRKHGNLYVRHSTSLHHNSFKLEK
Sbjct: 541 LLPRKNLFDLAVNQNMAHDSPLQETWTPLSYFSARRHRKHGNLYVRHSTSLHHNSFKLEK 600
Query: 601 DEISENDAHKSHNSQSDGDAKQERNNSTLFGSLEAHIGEEIKILGMAISEVGVLEVNSGM 660
DEISENDAHKSHNSQSDGDAKQERNNSTLFGSLEAHIGEEIKILGMAISEVGVLEVNSGM
Sbjct: 601 DEISENDAHKSHNSQSDGDAKQERNNSTLFGSLEAHIGEEIKILGMAISEVGVLEVNSGM 660
Query: 661 VSSNQNADFSDDISSSPFQKPRQSTFEAKDTVHAGIEQLTSCSPYKVNNFEAHIVEADSI 720
VSSNQNADFSDDISSSPFQKPRQSTFEAKDTVHAGIEQLTSCSPYKVNNFEAHIVEADSI
Sbjct: 661 VSSNQNADFSDDISSSPFQKPRQSTFEAKDTVHAGIEQLTSCSPYKVNNFEAHIVEADSI 720
Query: 721 DEFNSLFKCRMEEVLVQSISKSSISQPLTVKLEDELSEPLSPDSGTGTHFIDGSSVEDSD 780
DEFNSLFKCRMEEVLVQSISKSSISQPLTVKLEDELSEPLSPDSGTGTHFIDGSSVEDSD
Sbjct: 721 DEFNSLFKCRMEEVLVQSISKSSISQPLTVKLEDELSEPLSPDSGTGTHFIDGSSVEDSD 780
Query: 781 PRFAQLNDEALVSSTSNATCRNESIEEKSSEALLAGNEDYSELPNELLKSGDPQTADSSE 840
PRFAQLNDEALVSSTSNATCRNESIEEKSSEALLAGNEDYSELPNELLKSGDPQTADSSE
Sbjct: 781 PRFAQLNDEALVSSTSNATCRNESIEEKSSEALLAGNEDYSELPNELLKSGDPQTADSSE 840
Query: 841 IQVQVIDATDWHWQPLMVNRWTGVAASAVCSFNSYPEQQCDTVEHQLQFLGLTVKKQSLH 900
IQVQVIDATDWHWQPLMVNRWTGVAASAVCSFNSYPEQQCDTVEHQLQFLGLTVKKQSLH
Sbjct: 841 IQVQVIDATDWHWQPLMVNRWTGVAASAVCSFNSYPEQQCDTVEHQLQFLGLTVKKQSLH 900
Query: 901 KSPXXXXXXXXGKSVMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTELGDEXXXX 960
KSP GKSVMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTELGDE
Sbjct: 901 KSPTTTTTRTRGKSVMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTELGDESLLL 960
Query: 961 XXXXXXXXXXXXQDYEPETVADTAQALLLASRRMVLFPVNNSERLDKADDGSHWSLLVLD 1020
QDYEPETVADTAQALLLASRRMVLFPVNNSERLDKADDGSHWSLLVLD
Sbjct: 961 VSPSVASLLANLQDYEPETVADTAQALLLASRRMVLFPVNNSERLDKADDGSHWSLLVLD 1020
Query: 1021 NITGRFVHHDSMDGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSNGYDCGVYLLAV 1080
NITGRFVHHDSMDGAN QSNGYDCGVYLLAV
Sbjct: 1021 NITGRFVHHDSMDGANLPAATRLADALRPLLPAPPQGPPISGPTPQQSNGYDCGVYLLAV 1080
Query: 1081 ALAICRWWKKHPRTEEAAPCWFESVMDQVSAESVAAMRLNLAQKINLELIKQGDTTXXXX 1140
ALAICRWWKKHPRTEEAAPCWFESVMDQVSAESVAAMRLNLAQKINLELIKQGDTT
Sbjct: 1081 ALAICRWWKKHPRTEEAAPCWFESVMDQVSAESVAAMRLNLAQKINLELIKQGDTTPSSS 1140
Query: 1141 XXXXXXXXRHKHKMIGCLLPVSKPLDWSCSFCGNMRKVHTSLY 1183
RHKHKMIGCLLPVSKPLDWSCSFCGNMRKVHTSLY
Sbjct: 1141 WPSSSSSSRHKHKMIGCLLPVSKPLDWSCSFCGNMRKVHTSLY 1183
>Os11g0130800 Conserved hypothetical protein
Length = 447
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/367 (92%), Positives = 343/367 (93%)
Query: 185 SYGEPAVLVLGENQQTLSFKSKISITDCSIDKVETVAVEEHLDKTTTSNEVYVRERNFEG 244
SYGEPAVLVLGENQQTLSFKSKISITDCSIDKVETVAVEEHLDKTTTSNEVYVRERNFEG
Sbjct: 73 SYGEPAVLVLGENQQTLSFKSKISITDCSIDKVETVAVEEHLDKTTTSNEVYVRERNFEG 132
Query: 245 NIHDTHWEEKNGTYMTVDTALNEEIHTKDGTSDYDLQDTHREGKGITSVETDTVPCVAPS 304
NIHDTHWEEKNGTYMTVDTALN+EIHTKDGTSDYDLQDTHREGKGITSVETDTVPCVAPS
Sbjct: 133 NIHDTHWEEKNGTYMTVDTALNDEIHTKDGTSDYDLQDTHREGKGITSVETDTVPCVAPS 192
Query: 305 SFAYSGVTVETEDVGENSKKNDELQELGSINPESDNNKVQYQYQLGEFMSSCWEPVMRQE 364
SFAYSGVTVETEDVGENSKKNDELQELGSINPESDNNKVQYQYQLGEFMSSCWEPVMRQE
Sbjct: 193 SFAYSGVTVETEDVGENSKKNDELQELGSINPESDNNKVQYQYQLGEFMSSCWEPVMRQE 252
Query: 365 PQDACSDSESDLTESSPDASMTDIIPMLEELHPLIDLQTGHPSLVSRXXXXXXXXXXXXX 424
PQDACSDSESDLTESSPDASMTDIIPMLEELHPLIDLQTGHPSLVSR
Sbjct: 253 PQDACSDSESDLTESSPDASMTDIIPMLEELHPLIDLQTGHPSLVSRDNLNTSSDDDEDD 312
Query: 425 XXXXXXXXXXNQLEGKIDDFANWKDVIDLNYLDMDNNSKLEGMMDLQRAKNILKFELDKR 484
NQLEGKIDDFANWKDVIDLNYLDMDNNSKLEGMMDLQRAKNILKFELD+R
Sbjct: 313 LEEEDASTDENQLEGKIDDFANWKDVIDLNYLDMDNNSKLEGMMDLQRAKNILKFELDRR 372
Query: 485 LMDLQAADAVQKMEEASRFRVQVPSISTGRQNPFDSSNGSDEIIELPHVPDSAPSCLLPR 544
LMDLQAADAVQKMEEASRFRVQVPSISTGRQNPFDSSNGSDEIIELPHVPDSAPSCLLPR
Sbjct: 373 LMDLQAADAVQKMEEASRFRVQVPSISTGRQNPFDSSNGSDEIIELPHVPDSAPSCLLPR 432
Query: 545 KNLFDLA 551
KNLFDL
Sbjct: 433 KNLFDLC 439
>Os12g0102300 Similar to WRKY transcription factor 57
Length = 456
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 115/226 (50%), Gaps = 8/226 (3%)
Query: 915 VMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTELGDEXXXXXXXXXXXXXXXXQD 974
V+SH D L D+ L P+FL D +I F +AH+ + D+ D
Sbjct: 13 VLSHGDVVLLRCDLTILRGPHFLNDRIIAFYLAHLAADHHDDDLLLLPPSVPYLLSNLPD 72
Query: 975 YEPETVADTAQALLLASRRMVLFPVNNSERLDKADDGSHWSLLVLDN---ITG-RFVHHD 1030
P +VA A L LASRR+VL PVN++ + A+ GSHW+LLVLDN ++G RFVHHD
Sbjct: 73 --PASVAAVADPLRLASRRLVLLPVNDNPDVSHAEGGSHWTLLVLDNSNAVSGPRFVHHD 130
Query: 1031 SMDGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSNGYDCGVYLLAVALAICRWWKK 1090
S+ N Q+NGYDCGV++LAVA AIC WW
Sbjct: 131 SLPPTN-LPSARRLAAVLRPLLPASAIPLIEGPTPRQTNGYDCGVFVLAVARAICNWWPT 189
Query: 1091 HPRTEEAAPCWFESVMDQVSAESVAAMRLNLAQKINLELIKQGDTT 1136
R + W E+V +V+A+SV AMR L Q I+ LI+ TT
Sbjct: 190 RARHSNSDSDWLEAVKREVNADSVKAMRTQLLQLIH-TLIQNNTTT 234
>Os11g0102700 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 240
Score = 127 bits (318), Expect = 7e-29, Method: Composition-based stats.
Identities = 86/226 (38%), Positives = 115/226 (50%), Gaps = 7/226 (3%)
Query: 915 VMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTELGDEXXXXXXXXXXXXXXXXQD 974
V+SH D LF D+ L P+FL D +I F +AH+ + +
Sbjct: 13 VLSHGDVVLFRCDLTILRGPHFLNDRIIAFYLAHLAADHDADDDLLLLPPSIPYLLSNLP 72
Query: 975 YEPETVADTAQALLLASRRMVLFPVNNSERLDKADDGSHWSLLVLDN---ITG-RFVHHD 1030
+P +VA A L LASRR+VL PVN++ + A+ GSHW+LLVLDN ++G RFVHHD
Sbjct: 73 -DPASVAAVADPLRLASRRLVLLPVNDNPDVSHAEGGSHWTLLVLDNSNAVSGPRFVHHD 131
Query: 1031 SMDGANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSNGYDCGVYLLAVALAICRWWKK 1090
S+ N Q+NGYDCGV++LAVA AIC WW
Sbjct: 132 SLPPTN-LPSARRLAAVLRPLLPASAIPLIEGPTPRQTNGYDCGVFVLAVARAICNWWPT 190
Query: 1091 HPRTEEAAPCWFESVMDQVSAESVAAMRLNLAQKINLELIKQGDTT 1136
R + W E+V +V+A+SV AMR L Q I+ LI+ TT
Sbjct: 191 RARHSNSDSDWLEAVKREVNADSVKAMRTQLLQLIH-TLIQNNTTT 235
>Os01g0812050 Conserved hypothetical protein
Length = 1360
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 119/250 (47%), Gaps = 31/250 (12%)
Query: 367 DACSDSESDLTESS-PDASMTDIIPMLEELHPLIDLQTGHPSLVSRXXXXXXX------- 418
D S +SD ESS PDASMTDI P+L+E+ PL+ + HP + +
Sbjct: 346 DGSSGFDSDQAESSSPDASMTDIAPILDEIDPLLGASSTHPDTIPKDDSDTDSHVSSQDH 405
Query: 419 ------XXXXXXXXXXXXXXXXNQLEGKIDDFA----NWKDVIDLNYLDMDNNSKLEGMM 468
N+ +GK F + K+++DL Y +M+ N +LE +M
Sbjct: 406 QTDDDSNDETDNNDAKENGEEKNKEQGKEAAFIWTADDEKNLMDLGYSEMERNRRLELLM 465
Query: 469 DLQRAKNILKFELDKRLMDLQAADAVQKMEEASRFRVQVPSISTGRQNPFDSSNGSDEII 528
+R++ ++FE+D L+ + D + +++ SRF VQVP IS R+NPFD S+E
Sbjct: 466 ARRRSRKNIRFEIDNDLIGIDNNDGGRGVDDLSRFHVQVPHISVPRRNPFDLPYDSEEAA 525
Query: 529 ELPHVPDSAPSCLLPRKNLFDLAVNQNMAHDSPLQETWTPLSYFSARRHRKHGNLYVRHS 588
+P SAPS L RKN FDL ++Q+ D P A H +++ R
Sbjct: 526 ----IPGSAPSVLHTRKNPFDLPLDQSNDGDVSADNNVNPGELVKA----SHRDMFFR-- 575
Query: 589 TSLHHNSFKL 598
H+SF +
Sbjct: 576 ---RHDSFNI 582
>Os12g0103450 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 730
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 14/227 (6%)
Query: 913 KSVMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTELGDEXXXXXXXXXXXXXXXX 972
+S++S L+ SD+ SL P+++ D ++ + +A + D+
Sbjct: 506 RSLISCDGINLYESDLDSLRGPHWVTDAILGYALAKFSRAYSDDGLLLVQPTNAALLNNK 565
Query: 973 QDYEPETVADTAQALLLASRRMVLFPVNNSERLDKADDGSHWSLLVLDNITG----RFVH 1028
VA A LLLASRR+VL PVN++ ++A DG HWSLLV+ + +F+H
Sbjct: 566 H-----YVAAEADHLLLASRRLVLIPVNDNLDFNQAGDGKHWSLLVIHKTSNDGVIQFIH 620
Query: 1029 HDSMDGANXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXQSNGYDCGVYLLAVALAICR 1086
HDS+ + Q+NG DC +++LA ICR
Sbjct: 621 HDSVRSGDNSYNLHAAQKLANVLRGVLPTAGDVINAETPQQTNGNDCAIHVLAAVQVICR 680
Query: 1087 WWKKHPRTEEAAPC-WFESVMDQVSAESVAAMRLNLAQKINLELIKQ 1132
WW+ + ++ P W + ++S ++ MR +L Q I + K+
Sbjct: 681 WWRAN--ANKSGPADWIRKLDKRISEGNITQMRASLLQDIERDCQKK 725
>Os07g0472300 Conserved hypothetical protein
Length = 670
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 65/107 (60%), Gaps = 10/107 (9%)
Query: 448 KDVIDLNYLDMDNNSKLEGMMDLQRAKNILKFELDKRLMDLQAADAVQKMEEASRFRVQV 507
K+++++ L+++ N +LE ++ +RA+ + D+ L+D ++D++ K+EE S+F VQ+
Sbjct: 199 KNILNIGCLEIERNQRLENLIARRRARKYI----DRNLIDFGSSDSLPKIEELSKFNVQI 254
Query: 508 PSISTGRQNPFDSSNGSDEIIELPHVPDSAPSCLLPRKNLFDLAVNQ 554
P+I R+NPFD D + P+SAPS L + FDL ++
Sbjct: 255 PAIFAPRKNPFDLPYNED------NFPESAPSAPLNMLSKFDLPFDE 295
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 34,963,950
Number of extensions: 1337871
Number of successful extensions: 2666
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2651
Number of HSP's successfully gapped: 9
Length of query: 1183
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1071
Effective length of database: 11,187,833
Effective search space: 11982169143
Effective search space used: 11982169143
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 162 (67.0 bits)