Os12g0127600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 57.
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Os12g0127600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 57.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 418.98 | 0.962 | 3.25 | -0.0675 | 0.14 | -3.42 | 0.698 | 15.3 | -0.136 | 17.7 | 50.48 | 148 | -- | -- |
| 430.11 | 0.966 | 3.3 | -0.28 | 0.0716 | 1.25 | 0.862 | -- | -0.0582 | 15.8 | 48.62 | 23 | -- | -- |
| 419.78 | 0.954 | 3.25 | -0.0865 | 0.129 | -3.9 | -- | 17.5 | -0.131 | 18.9 | 49.58 | 152 | -- | -- |
| 416 | 0.95 | 3.3 | -0.357 | 0.0688 | 3.84 | -- | -- | -0.117 | 21.1 | 44.85 | 145 | -- | -- |
| 420.1 | 0.955 | 3.24 | -0.115 | -- | -5.4 | -- | 21.5 | -0.0952 | -- | 48.46 | 146 | -- | -- |
| 437.42 | 0.98 | 3.31 | -0.211 | 0.112 | -- | 0.997 | -- | -0.13 | 16.4 | -- | -- | -- | -- |
| 440.13 | 0.982 | 3.3 | -0.202 | 0.121 | -- | -- | -- | -0.125 | 16.9 | -- | -- | -- | -- |
| 416.28 | 0.95 | 3.3 | -0.353 | -- | 3.81 | -- | -- | -0.116 | -- | 44.83 | 145 | -- | -- |
| 419.28 | 0.954 | 3.3 | -- | 0.0724 | 3.75 | -- | -- | -0.0908 | 20.6 | 44.76 | 145 | -- | -- |
| 440.9 | 0.981 | 3.3 | -0.207 | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
| 441.2 | 0.983 | 3.3 | -- | 0.125 | -- | -- | -- | -0.102 | 16.9 | -- | -- | -- | -- |
| 419.51 | 0.954 | 3.29 | -- | -- | 3.62 | -- | -- | -0.0773 | -- | 44.91 | 146 | -- | -- |
| 442.03 | 0.981 | 3.3 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 410.16 | humidity | 50.0 | 90 | < th | dose independent | rect. | 15 | 20 |
| 2 | 410.50 | humidity | 50.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 3 | 410.56 | humidity | 50.0 | 90 | < th | dose independent | sin | 11 | NA |
| 4 | 410.68 | wind | 7.0 | 90 | > th | dose independent | rect. | 20 | 4 |
| 6 | 410.73 | wind | 7.0 | 90 | > th | dose dependent | rect. | 21 | 3 |
| 13 | 411.68 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 14 | 22 |
| 19 | 414.11 | humidity | 50.0 | 30 | > th | dose independent | sin | 11 | NA |
| 20 | 414.23 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 78 | 415.76 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 21 | 1 |
| 80 | 415.76 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 21 | 1 |
| 95 | 416.02 | humidity | 50.0 | 90 | < th | dose independent | rect. | 15 | 3 |
| 112 | 416.06 | temperature | 15.0 | 10 | > th | dose independent | rect. | 21 | 22 |
| 145 | 416.29 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 15 | 3 |
| 190 | 416.70 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 11 |
| 208 | 416.92 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 21 | 1 |
| 219 | 416.92 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 21 | 1 |
| 229 | 416.93 | humidity | 50.0 | 30 | > th | dose independent | rect. | 23 | 22 |
| 230 | 416.94 | temperature | 15.0 | 720 | > th | dose independent | rect. | 11 | 23 |
| 284 | 417.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 305 | 417.74 | wind | 1.0 | 10 | < th | dose independent | rect. | 14 | 2 |
| 307 | 417.74 | wind | 1.0 | 10 | < th | dose dependent | rect. | 14 | 2 |
| 330 | 417.84 | temperature | 15.0 | 720 | > th | dose independent | rect. | 10 | 17 |
| 346 | 418.05 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 385 | 418.29 | temperature | 15.0 | 10 | > th | dose independent | rect. | 21 | 11 |
| 401 | 418.41 | humidity | 50.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 407 | 418.48 | temperature | 15.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 426 | 418.55 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 427 | 418.56 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 447 | 418.81 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 12 |
| 458 | 418.85 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 2 |
| 461 | 418.91 | humidity | 90.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 466 | 419.15 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 468 | 419.25 | temperature | 15.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 469 | 419.28 | temperature | 15.0 | 720 | > th | dose independent | rect. | 12 | 15 |
| 517 | 419.77 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 520 | 419.84 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 521 | 419.84 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 523 | 419.90 | humidity | 50.0 | 90 | > th | dose independent | rect. | 7 | 13 |
| 524 | 419.91 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 18 | 1 |
| 528 | 420.03 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 531 | 420.09 | temperature | 15.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 543 | 420.09 | temperature | 15.0 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 556 | 420.13 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 12 |
| 561 | 420.17 | temperature | 15.0 | 720 | > th | dose independent | rect. | 10 | 19 |
| 565 | 420.22 | humidity | 60.0 | 720 | > th | dose independent | rect. | 22 | 12 |
| 576 | 420.30 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 20 |
| 587 | 420.46 | temperature | 30.0 | 90 | > th | dose independent | rect. | 15 | 18 |
| 589 | 420.51 | humidity | 50.0 | 90 | < th | dose dependent | no | NA | NA |
| 590 | 420.51 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 10 | 8 |
| 726 | 420.53 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 3 |
| 728 | 420.54 | humidity | 90.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 748 | 420.59 | temperature | 30.0 | 90 | > th | dose independent | rect. | 15 | 4 |
| 764 | 420.65 | temperature | 15.0 | 720 | > th | dose independent | rect. | 14 | 8 |
| 796 | 420.94 | radiation | 1.0 | 720 | < th | dose independent | rect. | 8 | 14 |
| 819 | 421.04 | humidity | 60.0 | 720 | > th | dose independent | rect. | 8 | 2 |
| 828 | 421.11 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 11 |
| 829 | 421.12 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 20 | 11 |
| 832 | 421.13 | wind | 1.0 | 30 | > th | dose dependent | rect. | 21 | 1 |
| 834 | 421.14 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 7 |
| 836 | 421.18 | temperature | 15.0 | 720 | > th | dose independent | rect. | 10 | 21 |
| 839 | 421.19 | wind | 3.0 | 30 | > th | dose independent | rect. | 19 | 2 |
| 850 | 421.23 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 10 |
| 855 | 421.28 | wind | 1.0 | 30 | > th | dose independent | rect. | 21 | 1 |
| 859 | 421.33 | humidity | 50.0 | 90 | > th | dose independent | sin | 17 | NA |
| 893 | 421.44 | humidity | 60.0 | 720 | > th | dose independent | rect. | 2 | 8 |
| 921 | 421.50 | temperature | 15.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 940 | 421.59 | temperature | 15.0 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 949 | 421.66 | humidity | 90.0 | 720 | < th | dose independent | rect. | 12 | 6 |
| 950 | 421.67 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 15 | 3 |
| 972 | 421.71 | radiation | 1.0 | 720 | < th | dose independent | sin | 15 | NA |
| 974 | 421.72 | temperature | 30.0 | 90 | > th | dose independent | sin | 12 | NA |
| 981 | 421.75 | humidity | 50.0 | 270 | < th | dose independent | sin | 8 | NA |
| 982 | 421.75 | humidity | 50.0 | 270 | < th | dose independent | sin | 6 | NA |
| 984 | 421.77 | wind | 5.0 | 10 | > th | dose independent | rect. | 13 | 1 |