BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0127600 Os12g0127600|Os12g0127600
         (1183 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60190.1  | chr5:24235319-24235999 FORWARD LENGTH=227           86   1e-16
AT5G17910.1  | chr5:5927906-5932292 FORWARD LENGTH=1343            67   5e-11

>AT5G60190.1 | chr5:24235319-24235999 FORWARD LENGTH=227
          Length = 226

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 9/218 (4%)

Query: 915  VMSHRDATLFSSDVASLAAPNFLLDGVINFVMAHMTTELGDEXXXXXXXXXXXXXXXXQD 974
            ++S+ D  L  SD+  L  P FL D VI F ++ ++T                      D
Sbjct: 10   ILSYEDVVLRRSDLDILNGPIFLNDRVIEFYLSFLSTVHSSTTISLIPPSIAFWISNCPD 69

Query: 975  YEPETVADTAQALLLASRRMVLFPVNNSERLDKADDGSHWSLLVLDNITGRFVHHDSMDG 1034
               E + D  + L L  + +++ PVN++  ++ A+ G HWSLLV       FVHHDS  G
Sbjct: 70   --TEYLKDFMKPLNLRDKDLLILPVNDNSNVEVAEGGLHWSLLVYYKEANTFVHHDSYMG 127

Query: 1035 ANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQSNGYDCGVYLLAVALAICRWWKKHPRT 1094
             N                              Q NGYDCGV+LLA A  IC W+      
Sbjct: 128  VNRWSAKQLFKAVSPFVSNGDASYKECTDTPQQKNGYDCGVFLLATARVICEWFSSG-GM 186

Query: 1095 EEAAPCWFESVMDQVSAESVAAMRLNLAQKINLELIKQ 1132
            +     WF +V      E+V  +  +L ++I L LIK+
Sbjct: 187  KNRDELWFANV-----KETVPDLVNHLREEI-LALIKK 218



>AT5G17910.1 | chr5:5927906-5932292 FORWARD LENGTH=1343
          Length = 1342

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 13/111 (11%)

Query: 445 ANWKDVIDLNYLDMDNNSKLEGMMDLQRAKNILKFELDKRLMDLQAADAVQKMEEASRFR 504
           A+ ++V+DL  L+++ N +LE ++  +RA++ ++   ++ L+D  +AD    M       
Sbjct: 360 ADQRNVMDLGSLELERNQRLENLIARRRARHNMRLMAERNLIDFDSADIPFNM------- 412

Query: 505 VQVPSISTGRQNPFDSSNGSDEIIELPHVPDSAPSCLLPRKNLFDLAVNQN 555
              P IST R NPFD S   D   ++P +P SAPS +  R+N FDL    N
Sbjct: 413 ---PPISTARHNPFDVSY--DSYDDMP-IPGSAPSIMFARRNPFDLPYEPN 457



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 23,228,093
Number of extensions: 926403
Number of successful extensions: 2086
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2084
Number of HSP's successfully gapped: 3
Length of query: 1183
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1073
Effective length of database: 8,090,809
Effective search space: 8681438057
Effective search space used: 8681438057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 117 (49.7 bits)