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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0472300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0185) R2 : 0.00131
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.03 (0.0389) R2dN8 : 0.00169 R2N8 : 0.00131
σ : 0.348
deviance : 55.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.13 0.342 2.6 -0.791 0.0462 -33.1 -0.332 -70.6 0.0467 4.21 15 713 -- --
55.01 0.348 3.02 0.0752 0.0611 0.256 -0.226 -- 0.0376 5.91 15 713 -- --
53.34 0.34 2.59 -0.788 0.0633 -33.4 -- -71 0.0483 6.97 15 704 -- --
53.66 0.343 3.02 0.12 0.065 0.577 -- -- 0.0504 7.36 15.7 438 -- --
53.55 0.341 2.59 -0.79 -- -33.3 -- -70.9 0.0495 -- 14.99 710 -- --
55.13 0.348 3.03 0.064 0.0552 -- -0.262 -- 0.0348 5.29 -- -- -- --
55.22 0.348 3.02 0.0646 0.0659 -- -- -- 0.0363 7.52 -- -- -- --
53.88 0.343 3.02 0.121 -- 0.578 -- -- 0.0515 -- 15.67 447 -- --
54.02 0.344 3.02 -- 0.0662 0.516 -- -- 0.0363 7.26 15.7 438 -- --
55.45 0.348 3.03 0.0656 -- -- -- -- 0.0373 -- -- -- -- --
55.33 0.348 3.03 -- 0.0664 -- -- -- 0.0291 7.46 -- -- -- --
54.25 0.343 3.03 -- -- 0.497 -- -- 0.039 -- 15.66 469 -- --
55.56 0.348 3.03 -- -- -- -- -- 0.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 50.64 temperature 25.0 90 > th dose independent rect. 1 3
2 50.71 temperature 25.0 90 > th dose dependent rect. 2 2
4 50.91 temperature 25.0 270 > th dose independent rect. 1 1
7 51.13 wind 9.0 10 < th dose independent rect. 3 23
16 51.42 temperature 15.0 30 > th dose independent rect. 3 23
18 51.45 atmosphere 1005.0 10 > th dose dependent rect. 2 3
19 51.46 wind 1.0 30 < th dose independent rect. 2 1
21 51.47 wind 3.0 30 < th dose dependent rect. 2 1
24 51.47 atmosphere 1005.0 30 > th dose dependent rect. 2 1
29 51.48 temperature 10.0 30 > th dose dependent rect. 2 1
33 51.49 temperature 10.0 30 > th dose independent rect. 2 1
36 51.49 temperature 25.0 30 < th dose independent rect. 2 1
38 51.49 humidity 50.0 30 > th dose independent rect. 2 1
43 51.49 atmosphere 995.0 30 > th dose independent rect. 2 1
44 51.49 atmosphere 1010.0 30 < th dose independent rect. 2 1
46 51.49 radiation 1.0 30 < th dose independent rect. 2 1
51 51.49 precipitation 0.1 30 < th dose independent rect. 2 1
54 51.49 humidity 50.0 30 > th dose dependent rect. 2 1
58 51.49 atmosphere 995.0 30 > th dose dependent rect. 2 1
60 51.49 radiation 1.0 30 < th dose dependent rect. 2 1
65 51.49 precipitation 0.1 30 < th dose dependent rect. 2 1
66 51.50 atmosphere 1005.0 30 > th dose independent rect. 2 1
67 51.50 atmosphere 1000.0 30 > th dose independent rect. 3 23
69 51.50 atmosphere 1015.0 30 < th dose dependent rect. 2 1
75 51.52 temperature 30.0 30 < th dose dependent rect. 2 1
85 51.58 wind 1.0 30 > th dose independent rect. 2 1
130 51.66 wind 9.0 30 < th dose dependent rect. 3 23
132 51.67 precipitation 0.1 30 < th dose independent rect. 3 23
133 51.67 precipitation 0.1 30 < th dose dependent rect. 3 23
138 51.70 temperature 10.0 30 > th dose dependent rect. 3 23
140 51.73 radiation 1.0 14400 < th dose dependent rect. 3 1
151 51.85 wind 9.0 1440 < th dose independent rect. 3 1
152 51.85 temperature 10.0 1440 > th dose independent rect. 3 1
155 51.85 temperature 30.0 1440 < th dose independent rect. 3 1
159 51.85 humidity 50.0 1440 > th dose independent rect. 3 1
168 51.85 atmosphere 995.0 1440 > th dose independent rect. 3 1
169 51.85 radiation 1.0 1440 < th dose independent rect. 3 1
189 51.85 temperature 10.0 1440 > th dose independent rect. 4 23
212 52.00 atmosphere 1015.0 1440 < th dose independent rect. 3 1
235 52.31 temperature 10.0 30 > th dose dependent rect. 5 21
253 52.50 radiation 1.0 720 < th dose dependent rect. 23 14
258 52.54 radiation 1.0 720 < th dose dependent rect. 1 12
269 52.62 radiation 1.0 720 < th dose dependent sin 6 NA
280 52.67 radiation 1.0 720 < th dose independent rect. 23 14
282 52.67 humidity 50.0 30 > th dose independent rect. 3 23
284 52.68 radiation 10.0 10 < th dose independent rect. 3 23
286 52.69 temperature 15.0 4320 > th dose independent rect. 12 1
287 52.69 temperature 15.0 4320 > th dose independent rect. 12 5
292 52.71 radiation 1.0 720 < th dose independent rect. 1 12
296 52.73 temperature 15.0 1440 > th dose independent rect. 8 9
298 52.74 temperature 20.0 10 > th dose dependent rect. 2 3
313 52.77 atmosphere 1010.0 30 < th dose independent rect. 3 23
316 52.78 radiation 1.0 270 < th dose dependent rect. 6 7
320 52.80 humidity 90.0 10 < th dose independent rect. 6 13
326 52.81 temperature 25.0 1440 < th dose independent rect. 1 1
327 52.81 temperature 15.0 720 > th dose independent rect. 5 10
328 52.81 humidity 80.0 4320 < th dose dependent rect. 1 1
341 52.84 radiation 1.0 720 < th dose independent sin 6 NA
344 52.85 atmosphere 1015.0 4320 < th dose independent rect. 15 1
347 52.85 temperature 15.0 1440 > th dose independent rect. 24 17
354 52.85 radiation 20.0 10 < th dose dependent rect. 3 23
355 52.86 atmosphere 1015.0 1440 < th dose independent rect. 17 2
358 52.87 radiation 1.0 720 < th dose independent rect. 6 7
362 52.88 temperature 15.0 4320 > th dose independent rect. 15 1
365 52.88 temperature 15.0 1440 > th dose independent rect. 24 4
374 52.89 temperature 15.0 1440 > th dose independent rect. 24 13
375 52.89 radiation 40.0 30 < th dose independent rect. 11 16
379 52.90 humidity 90.0 270 < th dose independent rect. 1 1
381 52.90 atmosphere 1015.0 1440 < th dose independent rect. 24 4
384 52.90 humidity 90.0 270 > th dose dependent rect. 7 4
385 52.90 humidity 90.0 270 > th dose dependent rect. 7 6
401 52.92 radiation 1.0 270 < th dose dependent rect. 7 3
404 52.92 temperature 15.0 270 > th dose dependent rect. 3 8
410 52.93 radiation 1.0 270 < th dose independent rect. 7 3
414 52.93 radiation 1.0 720 > th dose independent rect. 5 10
416 52.93 temperature 15.0 1440 > th dose independent rect. 21 20
421 52.94 temperature 15.0 720 > th dose independent rect. 5 12
425 52.94 humidity 90.0 10 < th dose independent rect. 6 20
433 52.95 wind 5.0 10 > th dose independent rect. 10 6
438 52.95 wind 3.0 10 > th dose dependent rect. 11 5
444 52.96 wind 7.0 10 > th dose independent rect. 10 3
446 52.96 humidity 90.0 270 > th dose independent rect. 7 6
471 52.97 humidity 90.0 30 < th dose independent sin 2 NA
477 52.97 temperature 15.0 1440 > th dose independent rect. 21 16
479 52.97 humidity 90.0 10 > th dose dependent rect. 8 4
483 52.97 temperature 15.0 10 > th dose dependent rect. 5 15
485 52.98 precipitation 0.1 720 > th dose independent rect. 5 9
488 52.98 temperature 15.0 90 > th dose dependent rect. 5 8
491 52.99 temperature 15.0 1440 > th dose independent rect. 21 7
495 52.99 temperature 15.0 90 > th dose dependent rect. 5 14
497 53.00 radiation 1.0 720 > th dose independent sin 6 NA
506 53.00 wind 5.0 10 > th dose dependent rect. 10 2
514 53.01 temperature 15.0 90 > th dose independent sin 22 NA
515 53.01 temperature 15.0 270 > th dose independent sin 0 NA
516 53.01 temperature 15.0 90 > th dose independent sin 4 NA
518 53.01 temperature 15.0 720 > th dose independent rect. 3 14
531 53.02 precipitation 0.1 720 < th dose independent sin 3 NA
535 53.02 wind 1.0 30 < th dose independent rect. 24 3
539 53.02 wind 7.0 30 < th dose independent rect. 5 21
541 53.02 precipitation 0.1 720 < th dose dependent sin 3 NA
554 53.03 temperature 15.0 1440 > th dose independent rect. 8 5
561 53.03 precipitation 0.1 720 > th dose dependent rect. 5 9
562 53.04 temperature 15.0 90 > th dose independent sin 20 NA
583 53.05 humidity 90.0 10 > th dose independent rect. 8 4
589 53.05 atmosphere 1015.0 720 < th dose independent rect. 23 16
603 53.06 precipitation 0.1 720 > th dose independent sin 3 NA
605 53.06 humidity 90.0 270 > th dose independent rect. 8 2
609 53.06 temperature 15.0 1440 > th dose independent rect. 3 10
613 53.06 precipitation 0.1 720 > th dose dependent sin 3 NA
621 53.07 humidity 90.0 30 > th dose independent sin 1 NA
642 53.07 precipitation 0.1 720 > th dose dependent rect. 6 7
643 53.07 radiation 1.0 270 < th dose dependent rect. 17 19
656 53.08 temperature 15.0 90 > th dose independent rect. 5 20
661 53.08 wind 9.0 270 > th dose dependent rect. 9 2
731 53.10 temperature 30.0 10 < th dose dependent rect. 2 12
744 53.11 atmosphere 1015.0 720 < th dose independent rect. 3 8
747 53.11 precipitation 0.1 720 > th dose independent rect. 1 13
763 53.11 temperature 15.0 10 > th dose dependent rect. 5 9
767 53.11 precipitation 0.1 720 > th dose dependent rect. 1 13
769 53.12 temperature 15.0 720 < th dose independent sin 10 NA
770 53.12 temperature 15.0 720 < th dose independent sin 21 NA
772 53.12 temperature 15.0 720 < th dose independent rect. 24 1
774 53.12 temperature 15.0 720 < th dose independent rect. 23 4
775 53.12 temperature 15.0 720 > th dose independent rect. 5 6
777 53.12 temperature 15.0 720 < th dose independent rect. 22 6
781 53.12 temperature 15.0 1440 < th dose independent rect. 3 8
783 53.12 temperature 15.0 720 < th dose independent rect. 21 9
785 53.12 temperature 15.0 720 < th dose independent rect. 20 11
790 53.12 temperature 15.0 720 < th dose independent rect. 19 16
803 53.12 radiation 10.0 10 < th dose independent rect. 5 21
804 53.12 temperature 15.0 720 < th dose dependent sin 7 NA
805 53.12 temperature 15.0 720 < th dose dependent sin 21 NA
807 53.12 temperature 15.0 4320 < th dose dependent rect. 6 1
813 53.12 temperature 15.0 720 < th dose dependent rect. 23 7
814 53.12 temperature 15.0 1440 < th dose dependent rect. 3 8
828 53.12 temperature 15.0 720 < th dose dependent rect. 23 16
836 53.13 temperature 15.0 1440 > th dose independent sin 21 NA
838 53.13 temperature 15.0 1440 < th dose independent sin 23 NA
841 53.13 temperature 15.0 4320 > th dose independent rect. 7 1
844 53.13 precipitation 0.1 720 > th dose independent rect. 6 3
848 53.13 radiation 40.0 30 < th dose independent rect. 11 5
850 53.13 temperature 15.0 1440 < th dose independent rect. 4 6
851 53.13 atmosphere 1015.0 1440 < th dose independent rect. 24 6
855 53.13 temperature 15.0 720 > th dose independent rect. 3 8
860 53.13 atmosphere 1015.0 1440 < th dose independent rect. 24 9
897 53.13 precipitation 0.1 720 > th dose independent rect. 1 18
898 53.13 temperature 15.0 720 < th dose independent rect. 1 19
899 53.13 temperature 15.0 720 < th dose independent rect. 5 19
940 53.13 temperature 15.0 720 < th dose independent rect. 3 23
958 53.13 precipitation 0.1 720 > th dose dependent rect. 6 3
964 53.13 temperature 15.0 1440 < th dose dependent rect. 4 6