BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0126200 Os12g0126200|AK099983
(320 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0126200 Engulfment and cell motility, ELM domain conta... 635 0.0
Os03g0322800 Engulfment and cell motility, ELM domain conta... 313 1e-85
Os04g0545100 Engulfment and cell motility, ELM domain conta... 241 6e-64
Os02g0652300 Engulfment and cell motility, ELM domain conta... 240 1e-63
Os11g0483900 Engulfment and cell motility, ELM domain conta... 230 1e-60
Os04g0101700 Engulfment and cell motility, ELM domain conta... 210 1e-54
Os11g0129600 Engulfment and cell motility, ELM domain conta... 89 5e-18
>Os12g0126200 Engulfment and cell motility, ELM domain containing protein
Length = 320
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/320 (95%), Positives = 307/320 (95%)
Query: 1 MASKAIKRKPYTADIDRSEKQMETIIPDSVREPLLGNRTHESKSERHEPNMQPNLWDGKG 60
MASKAIKRKPYTADIDRSEKQMETIIPDSVREPLLGNRTHESKSERHEPNMQPNLWDGKG
Sbjct: 1 MASKAIKRKPYTADIDRSEKQMETIIPDSVREPLLGNRTHESKSERHEPNMQPNLWDGKG 60
Query: 61 QERLGWMHIISTFIAQSVRKIGNALSQFGPLLAKFFSRSCASHGSHDEQAVLLDLSPXXX 120
QERLGWMHIISTFIAQSVRKIGNALSQFGPLLAKFFSRSCASHGSHDEQAVLLDLSP
Sbjct: 61 QERLGWMHIISTFIAQSVRKIGNALSQFGPLLAKFFSRSCASHGSHDEQAVLLDLSPLQE 120
Query: 121 XXXXXXXXXXNVPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDF 180
NVPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDF
Sbjct: 121 ERLRFLRQRLNVPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDF 180
Query: 181 RAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDLQSG 240
RAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDLQSG
Sbjct: 181 RAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDLQSG 240
Query: 241 KMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKSMRIQLEQE 300
KMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKSMRIQLEQE
Sbjct: 241 KMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKSMRIQLEQE 300
Query: 301 LTIGSISCVQEMPSFRLLKR 320
LTIGSISCVQEMPSFRLLKR
Sbjct: 301 LTIGSISCVQEMPSFRLLKR 320
>Os03g0322800 Engulfment and cell motility, ELM domain containing protein
Length = 317
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/323 (48%), Positives = 221/323 (68%), Gaps = 9/323 (2%)
Query: 1 MASKAIKRKPYTADID-RSEKQMETIIPDSVREPLLGNRTHESK-SERHEPNMQPNLWDG 58
M+ ++R+ + D+D R + ++ DS+ EPLLG + ++ SE ++P Q +LWD
Sbjct: 1 MSMTNLRRRLHHGDVDGRKNEHVDISSVDSLNEPLLGKSSSDTGGSEVYDPRRQ-DLWDD 59
Query: 59 -KGQERLGWMHIISTFIAQSVRKIGNALSQFGPLLAKFFSRSCASHGSHDEQAVLLDLSP 117
+ +E+L W + S IAQ + + N + G L + F S + S + LSP
Sbjct: 60 DRKKEQLHWSFLFSNLIAQWAQWLANIIVGSGSLFGRLFPFSLDNQNSSP-----VYLSP 114
Query: 118 XXXXXXXXXXXXXNVPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPA 177
+PFD S V+HQDAL++LWRLAYP+R +PPLKS+LWKEMGWQ +DP+
Sbjct: 115 LQEDRLNTLRSRLQIPFDGSRVEHQDALRQLWRLAYPNRDIPPLKSELWKEMGWQGTDPS 174
Query: 178 TDFRAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDL 237
TDFR GGF+SLENLI+FARNYP SF +LL+K G+R++WEYPFAVAG+NIS+ML+QMLDL
Sbjct: 175 TDFRGGGFISLENLIFFARNYPGSFQALLNKVQGQRADWEYPFAVAGINISFMLIQMLDL 234
Query: 238 QSGKMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKSMRIQL 297
QS +K +FV+LL DE AFD+L+C+AF++LDAQWL ++ASYMEFNEVLKS R QL
Sbjct: 235 QSSVPSSKSGVRFVELLGRDENAFDHLYCIAFRLLDAQWLVKRASYMEFNEVLKSTRTQL 294
Query: 298 EQELTIGSISCVQEMPSFRLLKR 320
E+EL + + V+++PS+ +L +
Sbjct: 295 ERELVLEDVLEVKDLPSYTMLDK 317
>Os04g0545100 Engulfment and cell motility, ELM domain containing protein
Length = 266
Score = 241 bits (615), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 156/229 (68%), Gaps = 1/229 (0%)
Query: 92 LAKFFSRSCASHGSHDEQAVLLDLSPXXXXXXXXXXXXXNVPFDSSSVKHQDALKELWRL 151
+ + FS CA D Q + DLSP VP+D S+ +HQ+ALK LW +
Sbjct: 39 IGRGFSCVCAQRRDSD-QRISFDLSPAQECCLQRLQNRIEVPYDGSNGEHQEALKTLWHV 97
Query: 152 AYPSRQLPPLKSDLWKEMGWQNSDPATDFRAGGFMSLENLIYFARNYPDSFHSLLHKADG 211
++P +L L SD WKEMGWQ DP+TDFR GGF+SLENL+YFA+NY SF LL K +G
Sbjct: 98 SFPGTELLGLVSDQWKEMGWQGKDPSTDFRGGGFISLENLLYFAKNYTKSFQELLCKQNG 157
Query: 212 KRSEWEYPFAVAGVNISYMLVQMLDLQSGKMGTKVSSQFVQLLREDEMAFDNLFCMAFQM 271
R+ WEYPFAVAGVNI++ML+QMLDLQ+ K + + S F+ LL E++ AFD L+C+ F++
Sbjct: 158 DRALWEYPFAVAGVNITFMLIQMLDLQAAKPRSLIGSVFLNLLLENDRAFDILYCITFKL 217
Query: 272 LDAQWLTRQASYMEFNEVLKSMRIQLEQELTIGSISCVQEMPSFRLLKR 320
+D +WL A+YM+FN V+KS R QLE+EL + I +++MPS+R L R
Sbjct: 218 MDHKWLEMHANYMDFNAVIKSTRRQLERELLLEDIQRIEDMPSYRFLDR 266
>Os02g0652300 Engulfment and cell motility, ELM domain containing protein
Length = 269
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 155/223 (69%), Gaps = 1/223 (0%)
Query: 99 SCASHGSHDEQAVL-LDLSPXXXXXXXXXXXXXNVPFDSSSVKHQDALKELWRLAYPSRQ 157
SC D A L DL+P V +DSS+ HQ+ALK+LWR ++P +
Sbjct: 47 SCVCAQRRDSDARLSFDLTPVQEECLQRLQNRLEVQYDSSNSDHQEALKDLWRASFPGAE 106
Query: 158 LPPLKSDLWKEMGWQNSDPATDFRAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWE 217
L L S+ WKEMGWQ DP+TDFR GGF+SLENL+YF++N+P SF LL K +G R+ WE
Sbjct: 107 LRGLISEQWKEMGWQGKDPSTDFRGGGFISLENLVYFSKNFPKSFQELLRKQNGDRAIWE 166
Query: 218 YPFAVAGVNISYMLVQMLDLQSGKMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWL 277
YPFAVAGVNI++ML+QMLDLQS K + + + F++LL E++ AFD L+C+ F+++D QWL
Sbjct: 167 YPFAVAGVNITFMLIQMLDLQSVKPRSFIGAVFLKLLSENDQAFDILYCITFKLMDQQWL 226
Query: 278 TRQASYMEFNEVLKSMRIQLEQELTIGSISCVQEMPSFRLLKR 320
A+YM+FN V+KS R QLE+EL + I +++MPS++LL R
Sbjct: 227 DMHATYMDFNTVMKSTRRQLERELLLEDIQRIEDMPSYKLLAR 269
>Os11g0483900 Engulfment and cell motility, ELM domain containing protein
Length = 250
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 155/240 (64%), Gaps = 2/240 (0%)
Query: 80 KIGNALSQFGP-LLAKFFSRSCASHGSHDEQAVLLDLSPXXXXXXXXXXXXXNVPFDSSS 138
KI N S P + K S C E+ + ++L+P V FD S
Sbjct: 11 KIANEASCGSPRWIGKSLSCVCIKRKGAYER-ICMNLTPVQEERLQRLRHRMKVYFDPSR 69
Query: 139 VKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRAGGFMSLENLIYFARNY 198
HQ+ALK LW YP ++L L S+ WK+MGWQ DP+TDFR GF+SLENL++FA+ +
Sbjct: 70 RDHQEALKALWHATYPDQELQGLISEQWKDMGWQGRDPSTDFRGAGFISLENLLFFAKTF 129
Query: 199 PDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLVQMLDLQSGKMGTKVSSQFVQLLREDE 258
SF LL K G R+ WEYPFAVAGVNI++M++QMLDLQS K T V + F+Q+L EDE
Sbjct: 130 SASFQRLLKKQCGNRATWEYPFAVAGVNITFMIMQMLDLQSTKPRTFVRAVFIQMLSEDE 189
Query: 259 MAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKSMRIQLEQELTIGSISCVQEMPSFRLL 318
AFD L+C+AF ++D QWL + ASYM+FNE+LKS R QLE+EL + + +++MPS+ LL
Sbjct: 190 WAFDLLYCVAFVVMDKQWLDKNASYMDFNEILKSTRTQLERELLLDDVMRIEDMPSYSLL 249
>Os04g0101700 Engulfment and cell motility, ELM domain containing protein
Length = 234
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 143/208 (68%)
Query: 113 LDLSPXXXXXXXXXXXXXNVPFDSSSVKHQDALKELWRLAYPSRQLPPLKSDLWKEMGWQ 172
+LSP N+P+D + HQ+AL+ LW ++P +L L S+ WK+MGWQ
Sbjct: 27 FELSPVQEQRLQKLKERLNIPYDQTRRDHQEALRALWSASFPDAELSSLISEQWKDMGWQ 86
Query: 173 NSDPATDFRAGGFMSLENLIYFARNYPDSFHSLLHKADGKRSEWEYPFAVAGVNISYMLV 232
+P+TDFR GF+ LENL++FA YP S+ LL K G R+ WEYPFAVAGVN+SYML+
Sbjct: 87 GPNPSTDFRGCGFVGLENLLFFATTYPASYQRLLLKKQGMRATWEYPFAVAGVNVSYMLI 146
Query: 233 QMLDLQSGKMGTKVSSQFVQLLREDEMAFDNLFCMAFQMLDAQWLTRQASYMEFNEVLKS 292
Q+L+L + + + F+++L E E AFD L+C+AF+M+DAQWL +ASYM+F +VL++
Sbjct: 147 QLLELNAERPKSLPGINFIKVLSEHEEAFDVLYCIAFEMMDAQWLAMRASYMQFKDVLEA 206
Query: 293 MRIQLEQELTIGSISCVQEMPSFRLLKR 320
+ QLE+EL++ ++ ++++P++ LL +
Sbjct: 207 TKQQLERELSLEDVNGIRDIPAYNLLYK 234
>Os11g0129600 Engulfment and cell motility, ELM domain containing protein
Length = 54
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/47 (91%), Positives = 44/47 (93%), Gaps = 3/47 (6%)
Query: 142 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFRAGGFMSL 188
QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR F+SL
Sbjct: 1 QDALKELWRLAYPSRQLPPLKSDLWKEMGWQNSDPATDFR---FVSL 44
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,127,502
Number of extensions: 378293
Number of successful extensions: 784
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 782
Number of HSP's successfully gapped: 7
Length of query: 320
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 219
Effective length of database: 11,762,187
Effective search space: 2575918953
Effective search space used: 2575918953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)