BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0104300 Os12g0104300|AK065998
(1129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0104300 Clp, N terminal domain containing protein 1912 0.0
Os11g0104300 Clp, N terminal domain containing protein 479 e-135
Os08g0250900 Conserved hypothetical protein 102 2e-21
Os02g0788600 Clp, N terminal domain containing protein 92 2e-18
Os04g0298700 Clp, N terminal domain containing protein 69 2e-11
>Os12g0104300 Clp, N terminal domain containing protein
Length = 1129
Score = 1912 bits (4954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 969/1129 (85%), Positives = 969/1129 (85%)
Query: 1 MPTPVAAARQCXXXXXXXXXXXXXXXXXXXXXXQTTXXXXXXXXXXXXXXXXXXXXXXXX 60
MPTPVAAARQC QTT
Sbjct: 1 MPTPVAAARQCLSPAAVPALDAAVASARRRAHAQTTSLHLISSLLAPPAPPLLRDALARA 60
Query: 61 XXXXXXXXVQLKALDLCFAVSLDRLPXXXXXXXXXXXDEPPVSNSLMAAIKRSQANQRRN 120
VQLKALDLCFAVSLDRLP DEPPVSNSLMAAIKRSQANQRRN
Sbjct: 61 RSAAYSPRVQLKALDLCFAVSLDRLPSVSASSSSGAADEPPVSNSLMAAIKRSQANQRRN 120
Query: 121 PDTFHFYHQAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILRPAXX 180
PDTFHFYHQAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILRPA
Sbjct: 121 PDTFHFYHQAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILRPAPP 180
Query: 181 XXXXXXXXXXXXXXXXXXCSFXXXXXXXVPSPAGNLAGAGEENCRRIAEILSRGRNPMLV 240
CSF VPSPAGNLAGAGEENCRRIAEILSRGRNPMLV
Sbjct: 181 MPLLGRLPTRTRPPPLFLCSFAAADDADVPSPAGNLAGAGEENCRRIAEILSRGRNPMLV 240
Query: 241 GVGXXXXXXXXXXXXPYRIIHVDPNTIDRSDLGVAAAMASATSGLIISIGDLKQLVPDED 300
GVG PYRIIHVDPNTIDRSDLGVAAAMASATSGLIISIGDLKQLVPDED
Sbjct: 241 GVGAASAADDFAAASPYRIIHVDPNTIDRSDLGVAAAMASATSGLIISIGDLKQLVPDED 300
Query: 301 AEAQENGRRVVAEVTRVLEAHSKVGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPI 360
AEAQENGRRVVAEVTRVLEAHSKVGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPI
Sbjct: 301 AEAQENGRRVVAEVTRVLEAHSKVGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPI 360
Query: 361 TAVHXXXXXXXXXXXXXXXXXXTTVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSC 420
TAVH TTVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSC
Sbjct: 361 TAVHAAPAAAGPAAAGGLMPPATTVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSC 420
Query: 421 PQALRCQQCNDKYEQEVATIISASGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKVRDD 480
PQALRCQQCNDKYEQEVATIISASGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKVRDD
Sbjct: 421 PQALRCQQCNDKYEQEVATIISASGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKVRDD 480
Query: 481 RMVLNSKILNLQKKWNEYCLRLHQDCQRINRDPYKPFPRYIGVPADKERSANPSKGSESI 540
RMVLNSKILNLQKKWNEYCLRLHQDCQRINRDPYKPFPRYIGVPADKERSANPSKGSESI
Sbjct: 481 RMVLNSKILNLQKKWNEYCLRLHQDCQRINRDPYKPFPRYIGVPADKERSANPSKGSESI 540
Query: 541 GVQKDVIKPCAVSAVHXXXXXXXXXXXXVTNKRNEDLVLNLQARHSKSDENLQERGMQSQ 600
GVQKDVIKPCAVSAVH VTNKRNEDLVLNLQARHSKSDENLQERGMQSQ
Sbjct: 541 GVQKDVIKPCAVSAVHSSSTARPISSPSVTNKRNEDLVLNLQARHSKSDENLQERGMQSQ 600
Query: 601 HGTLSNADNPDDHASPSSAAPVETDLVLCTPRDXXXXXXXXXXXXRVEDSERSVHLVPKK 660
HGTLSNADNPDDHASPSSAAPVETDLVLCTPRD RVEDSERSVHLVPKK
Sbjct: 601 HGTLSNADNPDDHASPSSAAPVETDLVLCTPRDCSSKGSSSTCSKRVEDSERSVHLVPKK 660
Query: 661 VDDLNLKHPQLSVQPNSCSWSSINVGKTSHSTLHSVASGGFSAFGQWQKRSPLAAQNSDL 720
VDDLNLKHPQLSVQPNSCSWSSINVGKTSHSTLHSVASGGFSAFGQWQKRSPLAAQNSDL
Sbjct: 661 VDDLNLKHPQLSVQPNSCSWSSINVGKTSHSTLHSVASGGFSAFGQWQKRSPLAAQNSDL 720
Query: 721 SNYKLLVERLFKVVGRQEEAVSAICESIVRCRSTESRRGPSRNDIWLCFHGSDSMAKKRI 780
SNYKLLVERLFKVVGRQEEAVSAICESIVRCRSTESRRGPSRNDIWLCFHGSDSMAKKRI
Sbjct: 721 SNYKLLVERLFKVVGRQEEAVSAICESIVRCRSTESRRGPSRNDIWLCFHGSDSMAKKRI 780
Query: 781 AVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKRRSVLFLDNIDRAD 840
AVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKRRSVLFLDNIDRAD
Sbjct: 781 AVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKRRSVLFLDNIDRAD 840
Query: 841 CLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVLSRSMIHGSKNGLEEGLSFSEEKILATR 900
CLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVLSRSMIHGSKNGLEEGLSFSEEKILATR
Sbjct: 841 CLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVLSRSMIHGSKNGLEEGLSFSEEKILATR 900
Query: 901 GHRLKILVEPGRAITSGCPSGKVVVSPRHFLTKIQASLCSGSISKRKLSMSDDQEKLQES 960
GHRLKILVEPGRAITSGCPSGKVVVSPRHFLTKIQASLCSGSISKRKLSMSDDQEKLQES
Sbjct: 901 GHRLKILVEPGRAITSGCPSGKVVVSPRHFLTKIQASLCSGSISKRKLSMSDDQEKLQES 960
Query: 961 PSSLKRLHRTSSIPFDLNLPVXXXXXXXXXXXXXXHENSYGNTEKSIDALLHSVDGSINF 1020
PSSLKRLHRTSSIPFDLNLPV HENSYGNTEKSIDALLHSVDGSINF
Sbjct: 961 PSSLKRLHRTSSIPFDLNLPVDEDEPFDADDDSSSHENSYGNTEKSIDALLHSVDGSINF 1020
Query: 1021 KPFDFDKLADDMLQEFSNILRKNLGAECMLEIDVGAMEQILAAAWKSEDKGPVQTWLEQV 1080
KPFDFDKLADDMLQEFSNILRKNLGAECMLEIDVGAMEQILAAAWKSEDKGPVQTWLEQV
Sbjct: 1021 KPFDFDKLADDMLQEFSNILRKNLGAECMLEIDVGAMEQILAAAWKSEDKGPVQTWLEQV 1080
Query: 1081 FARSLDELKLKYKHVSSSTLRLVPCEDTLPTVKGDGLGVLLPPRIILDC 1129
FARSLDELKLKYKHVSSSTLRLVPCEDTLPTVKGDGLGVLLPPRIILDC
Sbjct: 1081 FARSLDELKLKYKHVSSSTLRLVPCEDTLPTVKGDGLGVLLPPRIILDC 1129
>Os11g0104300 Clp, N terminal domain containing protein
Length = 435
Score = 479 bits (1232), Expect = e-135, Method: Compositional matrix adjust.
Identities = 275/417 (65%), Positives = 278/417 (66%), Gaps = 8/417 (1%)
Query: 1 MPTPVAAARQCXXXXXXXXXXXXXXXXXXXXXXQTTXXXXXXXXXXXXXXXXXXXXXXXX 60
MPTPVAAARQC QTT
Sbjct: 1 MPTPVAAARQCLSPAAVPALDAAVASSRRRAHAQTTSLHLISSLLAPPAPPLLRDALARA 60
Query: 61 XXXXXXXXVQLKALDLCFAVSLDRLPXXXXXXXXXXX-DEPPVSNSLMAAIKRSQANQRR 119
VQLKALDLCFAVSLDRLP DEPPVSNSLMAAIKRSQANQRR
Sbjct: 61 RSAAYSPRVQLKALDLCFAVSLDRLPSVSASSSSSGAADEPPVSNSLMAAIKRSQANQRR 120
Query: 120 NPDTFHFYHQAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILRPAX 179
NPDTFHFYHQAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILRPA
Sbjct: 121 NPDTFHFYHQAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILRPAP 180
Query: 180 XXXXXXXXXXXXXXXXXXXCSFXXXXXXXVPSPAGNLAGAGEENCRRIAEILSRGRNPML 239
CSF VPSPAGNLAGAGEENCRRIAEILSRGRNPML
Sbjct: 181 PMPLLGRLPTRTRPPPLFLCSFAAADDADVPSPAGNLAGAGEENCRRIAEILSRGRNPML 240
Query: 240 VGVGXXXXXXXXXXXXPYRIIHVDPNTIDRSDLGVAAAMASATSGLIISIGDLKQLVPDE 299
VGVG PYRIIHVDPNTIDRSDLGVAAAMASATSGLIISIGDLKQLVPDE
Sbjct: 241 VGVGAASAADDFAAASPYRIIHVDPNTIDRSDLGVAAAMASATSGLIISIGDLKQLVPDE 300
Query: 300 DAEAQENGRRVVAEVTRVLEAHSKVGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLP 359
DAEAQE GRRVVAEVTRVLE HSKVGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLP
Sbjct: 301 DAEAQEKGRRVVAEVTRVLETHSKVGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLP 360
Query: 360 ITAVHXXXXXXXXXXXXXXXXXXTTVAAFSKPAA------SLMDSFVPFGGFLCDNY 410
ITAVH TTVAAFSKPAA SL+ +FV LC +
Sbjct: 361 ITAVHAAATAGPAAAAAGLMPPATTVAAFSKPAARSSLFSSLLFTFVSMNS-LCIRF 416
>Os08g0250900 Conserved hypothetical protein
Length = 972
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 108/433 (24%), Positives = 185/433 (42%), Gaps = 57/433 (13%)
Query: 718 SDLSNYKLLVERLFKVVGRQEEAVSAICESIVRCRSTESRRG--PSRNDIWLCFHGSDSM 775
SD+ ++K L++ L + V Q +A SAI +++CRS +R +R D+WL F G D
Sbjct: 573 SDIESFKRLLKGLTEKVSWQSDAASAIAAVVIQCRSGSGKRRNVGTRGDMWLLFVGPDQA 632
Query: 776 AKKRIAVALAELMHGSKENLIYL--DLNL----QDWDDSSFRGKTGIDCIVEQLSKKRRS 829
K+++ AL+ELM ++ ++ D L D + F GKT +D + E + + S
Sbjct: 633 GKRKMVNALSELMANTRPVVVNFGGDSRLGRVGNDGPNMGFWGKTALDRVTEAVRQNPFS 692
Query: 830 VLFLDNIDRADCLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVLSRSMIHGSKNGLE-EG 888
V+ L+ ID+ D +V + A+++GR D RG+ V + + I VL+ + + G E
Sbjct: 693 VIVLEGIDQVDVVVHGKIKRAMETGRLPDSRGREVSLGNVIFVLTTNWVPEELKGSNVET 752
Query: 889 LSFSEEKILATRGHRLKILVEPGRAITSGCPSGKVVVSPRHFLTKIQASLCSGSISKRKL 948
L EE++L + ++ + S+ + R
Sbjct: 753 LLRGEERMLESTSSSWQL----------------------------ELSIGDKQVKHRAD 784
Query: 949 SMSDDQEKLQESPSSL-KRLHRTSSIPFDLNLPVXX------XXXXXXXXXXXXHENSYG 1001
+ DD P+ L K L + + DLNL V E
Sbjct: 785 WLCDDVR-----PAKLAKELSSSHGLSLDLNLAVGALDDTEGSHNSSDVSVEQEQEKGQL 839
Query: 1002 NTEKSIDA----LLHSVDGSINFKPFDFDKLADDMLQEFSNILRKNLGAECMLEIDVGAM 1057
++S A +L VD +I F+P DF + S +G+ ID A+
Sbjct: 840 AVKRSTPAPGSDILELVDDAIVFRPVDFTPFRKTVTDCISAKFESVMGSSSSFRIDEDAV 899
Query: 1058 EQILAAAWKSEDKGPVQTWLEQVFARSLDELKLKYKHVSS-STLRLVP-CEDTLPTVKGD 1115
+ ++ + W +++K ++ W E+V S++ L KH S S +RL LP G
Sbjct: 900 DWMVGSVWLTDEK--IEDWAEKVLKPSIERLWHNVKHDSGRSIIRLTAVAAKALPRWGGG 957
Query: 1116 GLGVLLPPRIILD 1128
G+ + I +D
Sbjct: 958 REGLPVAVTIAID 970
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 72 KALDLCFAVSLDRLPXXXXXXXXXXXD--EPPVSNSLMAAIKRSQANQRRN-PDTFHFYH 128
+AL+LCF+V+LDRLP PPVSN+L+AA+KR+QA QRR P+
Sbjct: 16 RALELCFSVALDRLPAAAAAAAAAHGAGASPPVSNALVAALKRAQAQQRRGCPE------ 69
Query: 129 QAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAI 174
A Q AVKVEL LVL+ILDDP VSRV EA F S +K I
Sbjct: 70 --AAQQPLLAVKVELEQLVLSILDDPSVSRVMREASFSSAAVKSII 113
>Os02g0788600 Clp, N terminal domain containing protein
Length = 965
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 170/389 (43%), Gaps = 56/389 (14%)
Query: 721 SNYKLLVERLFKVVGRQEEAVSAICESIVRCRSTESRR---GPSRNDIWLCFHGSDSMAK 777
++ KLLV+RL + V Q EA +A+ +I + RS E +R GP+R D W+ F G D K
Sbjct: 569 TDEKLLVKRLTEAVRWQPEAAAAVAAAITKARSGERKRRGMGPTRADTWVLFSGHDVAGK 628
Query: 778 KRIAVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKRRSVLFLDNID 837
++A AL+ + G+ + L N + +S RG+T +DC+ + + V+ LD D
Sbjct: 629 TKMAEALSMSVFGTNAVALRLAGNGGE-PIASCRGRTALDCVADAIRANPLRVIVLDGFD 687
Query: 838 RA--DCLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVLSRSMIHGSKNGLEEGLSFSEEK 895
D +VQ S+ A++SGR D RG+ V + ++I V+ M +E F++
Sbjct: 688 HHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIFVV---MSLDDTRRCQEDHQFTDSP 744
Query: 896 I---LATRGHRLKILVEPGRAITSGCPSGKVVVSPRHFLTKIQASLCSGSISKRKLSMSD 952
L R + K EP G +G + PR + L LSM +
Sbjct: 745 WNLELRVRNNARKRRPEP--QPLDG--AGDRRLKPRKDSPPLHLDL--------NLSMCE 792
Query: 953 DQEKLQESPSSLKRLHRTSSIPFDLNLPVXXXXXXXXXXXXXXHENSYG---------NT 1003
D +S R +SS DL + HE YG +
Sbjct: 793 DHTDDDDSGGEESR--NSSS---DLTV---------------EHEQEYGQPAAAAAKFSA 832
Query: 1004 EKSIDALLHSVDGSINFKPFDFDKLADDMLQEFSNILRKNLGAECMLEIDV--GAMEQIL 1061
S L +VD ++ FKP DF L + S L GA L + V G ++++
Sbjct: 833 PSSFSELTKAVDATVVFKPVDFGPLKRSVSDVVSAKLGDAAGAGAGLSVHVDDGVLDRLA 892
Query: 1062 AAAWKS-EDKGPVQTWLEQVFARSLDELK 1089
AAW + E ++ W ++V ++ +LK
Sbjct: 893 GAAWTAGESATSLEAWADEVLCPTIRQLK 921
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 62/108 (57%), Gaps = 11/108 (10%)
Query: 69 VQLKALDLCFAVSLDRLPXXXXXXXXXXXDEPPVSNSLMAAIKRSQANQRRNPDTFHFYH 128
++ +ALDLCFAV+LDRLP PP+SN+L AA+KR+ A+ RR
Sbjct: 77 LRCRALDLCFAVALDRLPTSTEHQHHHAA--PPLSNALAAALKRAYAHHRR--------- 125
Query: 129 QAATAQTPAAVKVELSHLVLAILDDPVVSRVFAEAGFRSGDIKLAILR 176
+ +V + HLVLAILDDP V+RV EA F S +K A+LR
Sbjct: 126 IGSGVVEADDHRVGVPHLVLAILDDPSVARVMREASFSSTAVKAAMLR 173
>Os04g0298700 Clp, N terminal domain containing protein
Length = 517
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 66/133 (49%), Gaps = 30/133 (22%)
Query: 69 VQLKALDLCFAVSLDRLPXXXXX-----------------XXXXXXDEPPVSNSLMAAIK 111
+Q +AL+LCF V+L+RLP P +SN+L+AA+K
Sbjct: 84 LQCRALELCFNVALNRLPTSAPHSPPPSSSAPSGAVAPPFASSLIQPNPTLSNALVAALK 143
Query: 112 RSQANQRRNPDTFHFYHQ----------AATAQTPA---AVKVELSHLVLAILDDPVVSR 158
R+QANQRR AATAQ A+KVEL L+++ILDDP VSR
Sbjct: 144 RAQANQRRGCVELQQQPPPPPPPPPPPVAATAQQQQPLLAIKVELDQLIISILDDPSVSR 203
Query: 159 VFAEAGFRSGDIK 171
V EAGF S +K
Sbjct: 204 VMREAGFSSSTVK 216
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 33,309,616
Number of extensions: 1275967
Number of successful extensions: 3031
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3026
Number of HSP's successfully gapped: 7
Length of query: 1129
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1017
Effective length of database: 11,187,833
Effective search space: 11378026161
Effective search space used: 11378026161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)