Os02g0788600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Clp, N terminal domain containing protein.
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Os02g0788600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Clp, N terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 308.91 | 0.826 | 5.53 | -0.879 | 8.64 | -10.8 | 1.37 | -1.29 | 0.00321 | 3.96 | 0.8297 | 763 | 8.8 | -- |
| 310.05 | 0.82 | 5.52 | -0.834 | 8.59 | -10.7 | 0.643 | -- | 0.0166 | 4.08 | 0.8226 | 763 | 8.55 | -- |
| 309.32 | 0.819 | 5.54 | -0.927 | 8.54 | -10.7 | -- | 0.362 | -0.011 | 3.94 | 0.8287 | 765 | 8.84 | -- |
| 309.44 | 0.819 | 5.55 | -0.923 | 8.41 | -10.6 | -- | -- | -0.00252 | 3.84 | 0.83 | 765 | 9.03 | -- |
| 545.65 | 1.09 | 5.58 | -0.403 | -- | 1.76 | -- | 0.888 | 0.177 | -- | 0.8287 | 765 | 8.84 | -- |
| 411.96 | 0.952 | 5.65 | -0.413 | 2.47 | -- | 1.1 | -- | 0.163 | 22.2 | -- | -- | -- | -- |
| 416.77 | 0.956 | 5.65 | -0.456 | 2.46 | -- | -- | -- | 0.16 | 22.2 | -- | -- | -- | -- |
| 420.66 | 0.959 | 5.58 | -0.459 | -- | 2.4 | -- | -- | 0.165 | -- | 162.7 | 1533 | 7.59 | -- |
| 330.74 | 0.847 | 5.51 | -- | 8.05 | -10.1 | -- | -- | 0.117 | 3.89 | 0.9893 | 768 | 8.84 | -- |
| 784.91 | 1.31 | 5.58 | -0.421 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 422.24 | 0.961 | 5.64 | -- | 2.46 | -- | -- | -- | 0.211 | 22.2 | -- | -- | -- | -- |
| 423.94 | 0.959 | 5.58 | -- | -- | 2.54 | -- | -- | 0.212 | -- | 1450 | 2119 | 13.5 | -- |
| 789.58 | 1.31 | 5.57 | -- | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 301.10 | temperature | 20 | 90 | > th | dose independent | rect. | 14 | 15 |
| 2 | 301.76 | temperature | 10 | 90 | > th | dose dependent | rect. | 15 | 14 |
| 4 | 302.57 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 9 | 307.61 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 10 | 308.04 | wind | 3 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 11 | 308.08 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 13 | 308.28 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 14 | 308.30 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 16 | 308.43 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 17 | 308.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 5 |
| 19 | 308.57 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 22 | 308.82 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 3 |
| 23 | 308.93 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 31 | 309.39 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 37 | 309.77 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 63 | 310.52 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 80 | 311.01 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 109 | 311.45 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 123 | 311.60 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 176 | 312.28 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |
| 222 | 312.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 2 |
| 261 | 313.40 | wind | 9 | 43200 | < th | dose dependent | sin | 20 | NA |
| 266 | 313.46 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 268 | 313.49 | wind | 1 | 43200 | > th | dose dependent | sin | 20 | NA |
| 325 | 314.32 | wind | 5 | 43200 | < th | dose independent | sin | 18 | NA |
| 389 | 315.08 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 392 | 315.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 396 | 315.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 462 | 315.92 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 484 | 316.06 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 487 | 316.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 8 |
| 497 | 316.19 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 509 | 316.32 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 536 | 316.61 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 591 | 317.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 13 |
| 802 | 319.65 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 871 | 320.38 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 911 | 320.82 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 929 | 320.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 952 | 321.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 970 | 321.42 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 1 |