BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0788600 Os02g0788600|Os02g0788600
(965 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0788600 Clp, N terminal domain containing protein 1524 0.0
Os08g0250900 Conserved hypothetical protein 345 8e-95
Os12g0104300 Clp, N terminal domain containing protein 80 5e-15
>Os02g0788600 Clp, N terminal domain containing protein
Length = 965
Score = 1524 bits (3945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/902 (87%), Positives = 785/902 (87%)
Query: 64 RDACVAGLASPHPLRCRALDLCFAVALDRLPTSTEHQXXXXXXXXXXXXXXXXXXXXXXX 123
RDACVAGLASPHPLRCRALDLCFAVALDRLPTSTEHQ
Sbjct: 64 RDACVAGLASPHPLRCRALDLCFAVALDRLPTSTEHQHHHAAPPLSNALAAALKRAYAHH 123
Query: 124 XXIGSGVVEADDHRVGVPHLVLAILDDPSVARVMREASFSSTAVKAAMLRSLSDPAAPDS 183
IGSGVVEADDHRVGVPHLVLAILDDPSVARVMREASFSSTAVKAAMLRSLSDPAAPDS
Sbjct: 124 RRIGSGVVEADDHRVGVPHLVLAILDDPSVARVMREASFSSTAVKAAMLRSLSDPAAPDS 183
Query: 184 GVYVNARVLHRQVSHRXXXXXXXXXXLKRGKKRNPVLVGXXXXXXXXXXXXXTMIQRQRL 243
GVYVNARVLHRQVSHR LKRGKKRNPVLVG TMIQRQRL
Sbjct: 184 GVYVNARVLHRQVSHREEEVNKVVEVLKRGKKRNPVLVGDTVDVDAVVQEVVTMIQRQRL 243
Query: 244 GNARVISFQREFGDLVDLDRAELAAKIKELGEAIRSELLSPASRSAGVVVNLGNLQWLVE 303
GNARVISFQREFGDLVDLDRAELAAKIKELGEAIRSELLSPASRSAGVVVNLGNLQWLVE
Sbjct: 244 GNARVISFQREFGDLVDLDRAELAAKIKELGEAIRSELLSPASRSAGVVVNLGNLQWLVE 303
Query: 304 ERCVAPGEQEKRRDVVLDTARAAVAEMARILRQSGEREHRVWVIGTATCATYLKCQVYHP 363
ERCVAPGEQEKRRDVVLDTARAAVAEMARILRQSGEREHRVWVIGTATCATYLKCQVYHP
Sbjct: 304 ERCVAPGEQEKRRDVVLDTARAAVAEMARILRQSGEREHRVWVIGTATCATYLKCQVYHP 363
Query: 364 SLESEWDLQAVPITXXXXXXXXXXXXXXXXVNGVNRGILSSSVEVLSSAMTTSAMQSRSP 423
SLESEWDLQAVPIT VNGVNRGILSSSVEVLSSAMTTSAMQSRSP
Sbjct: 364 SLESEWDLQAVPITPRPPPPPPSSLGLSPSVNGVNRGILSSSVEVLSSAMTTSAMQSRSP 423
Query: 424 SLCSACLDGYERERADMASSPGCGALHATEQPMSQWLQIGTPSSARPPFDRAQDKAREAD 483
SLCSACLDGYERERADMASSPGCGALHATEQPMSQWLQIGTPSSARPPFDRAQDKAREAD
Sbjct: 424 SLCSACLDGYERERADMASSPGCGALHATEQPMSQWLQIGTPSSARPPFDRAQDKAREAD 483
Query: 484 ELRRRWLDRCAQLHSHXXXXXXXXRPSSMVTCSEWNGASVLANMQAIPVRXXXXXXXXXX 543
ELRRRWLDRCAQLHSH RPSSMVTCSEWNGASVLANMQAIPVR
Sbjct: 484 ELRRRWLDRCAQLHSHGGGGCGGGRPSSMVTCSEWNGASVLANMQAIPVRPPPPAAAAAP 543
Query: 544 XXXVDTDLALGPAASTASRPPAYCDTDEKLLVKRLTEAVRWQPEXXXXXXXXITKARSGE 603
VDTDLALGPAASTASRPPAYCDTDEKLLVKRLTEAVRWQPE ITKARSGE
Sbjct: 544 AAAVDTDLALGPAASTASRPPAYCDTDEKLLVKRLTEAVRWQPEAAAAVAAAITKARSGE 603
Query: 604 RKRRGMGPTRADTWVLFSGHDVAGKTKMAEALSMSVFGTNAVALRLAGNGGEPIASCRGR 663
RKRRGMGPTRADTWVLFSGHDVAGKTKMAEALSMSVFGTNAVALRLAGNGGEPIASCRGR
Sbjct: 604 RKRRGMGPTRADTWVLFSGHDVAGKTKMAEALSMSVFGTNAVALRLAGNGGEPIASCRGR 663
Query: 664 TALDCVADAIRANPLRVIVLDGFDHHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIF 723
TALDCVADAIRANPLRVIVLDGFDHHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIF
Sbjct: 664 TALDCVADAIRANPLRVIVLDGFDHHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIF 723
Query: 724 VVMSLDDTRRCQEDHQFTDSPWNLELRVRNNARKRRPEPQPLDGAGDRRLKPRKDSPPLH 783
VVMSLDDTRRCQEDHQFTDSPWNLELRVRNNARKRRPEPQPLDGAGDRRLKPRKDSPPLH
Sbjct: 724 VVMSLDDTRRCQEDHQFTDSPWNLELRVRNNARKRRPEPQPLDGAGDRRLKPRKDSPPLH 783
Query: 784 LDLNLSMCEDHTDDDDSGGEESRNSSSDLTVEHEQEYGQXXXXXXXXXXXXXXXELTKAV 843
LDLNLSMCEDHTDDDDSGGEESRNSSSDLTVEHEQEYGQ ELTKAV
Sbjct: 784 LDLNLSMCEDHTDDDDSGGEESRNSSSDLTVEHEQEYGQPAAAAAKFSAPSSFSELTKAV 843
Query: 844 DATVVFKPVDFGPLKRSVSDVVSAKLXXXXXXXXXLSVHVDDGVLDRLAGAAWTAGESAT 903
DATVVFKPVDFGPLKRSVSDVVSAKL LSVHVDDGVLDRLAGAAWTAGESAT
Sbjct: 844 DATVVFKPVDFGPLKRSVSDVVSAKLGDAAGAGAGLSVHVDDGVLDRLAGAAWTAGESAT 903
Query: 904 SLEAWADEVLCPTIRQLKRSLSANDVDGATTVSLSAVEGSGGRRRKDGEVFPTSVTVAVD 963
SLEAWADEVLCPTIRQLKRSLSANDVDGATTVSLSAVEGSGGRRRKDGEVFPTSVTVAVD
Sbjct: 904 SLEAWADEVLCPTIRQLKRSLSANDVDGATTVSLSAVEGSGGRRRKDGEVFPTSVTVAVD 963
Query: 964 GN 965
GN
Sbjct: 964 GN 965
>Os08g0250900 Conserved hypothetical protein
Length = 972
Score = 345 bits (886), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 320/1015 (31%), Positives = 445/1015 (43%), Gaps = 179/1015 (17%)
Query: 75 HPLRCRALDLCFAVALDRLPTSTEHQXXXXXXXXXXXXXXXXXXXXXXXXXIGS-GVVEA 133
HPL CRAL+LCF+VALDRLP + G EA
Sbjct: 11 HPLHCRALELCFSVALDRLPAAAAAAAAAHGAGASPPVSNALVAALKRAQAQQRRGCPEA 70
Query: 134 DDH-----RVGVPHLVLAILDDPSVARVMREASFSSTAVKAAMLRSLSDPA--------- 179
+V + LVL+ILDDPSV+RVMREASFSS AVK+ + +SLS P+
Sbjct: 71 AQQPLLAVKVELEQLVLSILDDPSVSRVMREASFSSAAVKSIIEQSLSAPSPCPSAAAST 130
Query: 180 -----------------APDSGVYVNARVLHRQVSHRXXXXXXXXXXLK------RGKKR 216
A + Y+N R+ K + +R
Sbjct: 131 TTAGPGPLSPSPSPLPRAGAANAYLNPRLAAAAAVASGGGGGGGDDARKVIDVMLKPTRR 190
Query: 217 NPVLVGXXXXXXXXXXXXXTMIQR--QRLGNARVISFQREFGDLVDLDRAELAAKIKELG 274
NPVLVG + L A+V+ + E L D+A +AA+I +LG
Sbjct: 191 NPVLVGDAGPDAVLKEAIRRIPTAGFPALAGAKVLPLEAELAKLAG-DKAAMAARIGDLG 249
Query: 275 EAIRSELLSPASRSAGVVVNLGNLQWLVEERCVAPGEQEKRRDVVLDTARAAVAEMARIL 334
+ L GVV++LG+L+WLV+ A E K AAVAEM R+L
Sbjct: 250 AVVERLL----GEHGGVVLDLGDLKWLVDGPAAAASEGGK----------AAVAEMGRLL 295
Query: 335 RQSGEREHRVWVIGTATCATYLKCQVYHPSLESEWDLQAVPITXXXXXXXXXXXXXXXXV 394
R+ G VW + TA C TYL+C+VYHP +E+EWDL AVPI
Sbjct: 296 RRFGR--AGVWAVCTAACTTYLRCKVYHPGMEAEWDLHAVPIARGGAPIAAAAAGSALRP 353
Query: 395 NGVNRGILSSSVEVLSSAM-----TTSAMQ----------SRSPSLCSACLDGYERERAD 439
G GIL+SS+ +LS A+ T +A++ + P++C C YERE A
Sbjct: 354 GG--SGILNSSMGMLSPALRPMPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYERELAK 411
Query: 440 MASSPGCGALHATEQPMSQWLQIGTPSSARP------PFDRAQDKARE--------ADEL 485
+ + T++P S+ P +A+P Q+KA+E DEL
Sbjct: 412 LEA-------EQTDKPASR------PEAAKPGLPHWLQLSNDQNKAKEQELKLKRSKDEL 458
Query: 486 RRRWLDRCAQLHSHXXXXXXXXRPSSMVT--------CSEWNGASVLANMQAIP------ 531
R+W + CA++HS P + T GA+V ++ P
Sbjct: 459 ERKWRETCARIHSACPMAPALSVPLATFTPRPPVEPKLGVARGAAV-PTLKMNPSWEKPS 517
Query: 532 VRXXXXXXXXXXXXXVDTDLAL--------------------GPAASTASRPPAYCDTDE 571
V V TDL L G A ++ D +
Sbjct: 518 VAPTLELRKSPPASPVKTDLVLCRLDPGTNPAVENEQKESCEGLTALQKAKIAGISDIES 577
Query: 572 -KLLVKRLTEAVRWQPEXXXXXXXXITKARSGERKRRGMGPTRADTWVLFSGHDVAGKTK 630
K L+K LTE V WQ + + + RSG KRR +G TR D W+LF G D AGK K
Sbjct: 578 FKRLLKGLTEKVSWQSDAASAIAAVVIQCRSGSGKRRNVG-TRGDMWLLFVGPDQAGKRK 636
Query: 631 MAEALSMSVFGTNAVALRLAG--------NGGEPIASCRGRTALDCVADAIRANPLRVIV 682
M ALS + T V + G N G P G+TALD V +A+R NP VIV
Sbjct: 637 MVNALSELMANTRPVVVNFGGDSRLGRVGNDG-PNMGFWGKTALDRVTEAVRQNPFSVIV 695
Query: 683 LDGFDHHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIFVVMS-----------LDDT 731
L+G D D VV I RA+E+GRL DSRGR+V+LG IFV+ + ++
Sbjct: 696 LEGIDQVD--VVVHGKIKRAMETGRLPDSRGREVSLGNVIFVLTTNWVPEELKGSNVETL 753
Query: 732 RRCQEDH-QFTDSPWNLELRVRNNARKRRPEPQPLDGAGDRRLKPRKDSPPLHLDLNLSM 790
R +E + T S W LEL + + K R + D + K S L LDLNL++
Sbjct: 754 LRGEERMLESTSSSWQLELSIGDKQVKHRADWLCDDVRPAKLAKELSSSHGLSLDLNLAV 813
Query: 791 CEDHTDDDDSGGEESRNSSSDLTVEHEQEYGQXXXXXXXXXXXXXXXELTKAVDATVVFK 850
DD E ++SSD++VE EQE GQ EL VD +VF+
Sbjct: 814 --GALDDT-----EGSHNSSDVSVEQEQEKGQLAVKRSTPAPGSDILEL---VDDAIVFR 863
Query: 851 PVDFGPLKRSVSDVVSAKLXXXXXXXXXLSVHVDDGVLDRLAGAAWTAGESATSLEAWAD 910
PVDF P +++V+D +SAK S +D+ +D + G+ W E +E WA+
Sbjct: 864 PVDFTPFRKTVTDCISAKFESVMGSSS--SFRIDEDAVDWMVGSVWLTDE---KIEDWAE 918
Query: 911 EVLCPTIRQLKRSLSANDVDGATTVSLSAVEGSGGRRRKDG-EVFPTSVTVAVDG 964
+VL P+I +L ++ + G + + L+AV R G E P +VT+A+DG
Sbjct: 919 KVLKPSIERLWHNVKHD--SGRSIIRLTAVAAKALPRWGGGREGLPVAVTIAIDG 971
>Os12g0104300 Clp, N terminal domain containing protein
Length = 1129
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 6/158 (3%)
Query: 569 TDEKLLVKRLTEAVRWQPEXXXXXXXXITKARSGERKRRGMGPTRADTWVLFSGHDVAGK 628
++ KLLV+RL + V Q E I + RS E +R GP+R D W+ F G D K
Sbjct: 721 SNYKLLVERLFKVVGRQEEAVSAICESIVRCRSTESRR---GPSRNDIWLCFHGSDSMAK 777
Query: 629 TKMAEALSMSVFGTNAVALRLAGNGGE-PIASCRGRTALDCVADAIRANPLRVIVLDGFD 687
++A AL+ + G+ + L N + +S RG+T +DC+ + + V+ LD D
Sbjct: 778 KRIAVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKRRSVLFLDNID 837
Query: 688 HHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIFVV 725
D +VQ S+ A++SGR D RG+ V + ++I V+
Sbjct: 838 RA--DCLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVL 873
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,450,570
Number of extensions: 1126808
Number of successful extensions: 3687
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3670
Number of HSP's successfully gapped: 6
Length of query: 965
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 855
Effective length of database: 11,292,261
Effective search space: 9654883155
Effective search space used: 9654883155
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)