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Os12g0104300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Clp, N terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0288) R2 : 0.35
β1 : -0.961 (0.106) R2dD : 0.125 R2D : 0.0684
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.52 (0.0599) R2dE : 0.109 R2E : 0.0817
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2 (0.244) R2dD*E : 0.102 R2D*E : 0.0284
γ1 : -0.501 (0.0615) R2dN8 : 0.127 R2N8 : 0.0268
σ : 0.535
deviance : 131.86
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 87
memory length : 243
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.53 0.533 12.5 -0.931 0.206 0.593 -0.745 -2.14 -0.509 8.79 86.99 285 -- --
147.1 0.565 12.5 -0.78 0.214 0.519 -1.19 -- -0.485 12.1 86.98 354 -- --
130.29 0.532 12.5 -0.959 0.197 0.576 -- -2.1 -0.509 8.76 86.87 275 -- --
150.67 0.572 12.5 -0.825 0.168 0.554 -- -- -0.501 8.1 86.88 285 -- --
131.86 0.535 12.5 -0.961 -- 0.52 -- -2 -0.501 -- 87 243 -- --
160.34 0.594 12.5 -0.905 0.338 -- -1.15 -- -0.412 15.2 -- -- -- --
164.54 0.601 12.5 -0.928 0.34 -- -- -- -0.419 15.6 -- -- -- --
151.64 0.574 12.5 -0.841 -- 0.489 -- -- -0.491 -- 86.44 244 -- --
168.15 0.604 12.5 -- 0.22 0.649 -- -- -0.422 7.72 86.05 294 -- --
170.95 0.611 12.5 -0.943 -- -- -- -- -0.428 -- -- -- -- --
187.25 0.64 12.5 -- 0.358 -- -- -- -0.315 15.6 -- -- -- --
170 0.607 12.5 -- -- 0.548 -- -- -0.408 -- 86.04 251 -- --
194.38 0.651 12.5 -- -- -- -- -- -0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.42 humidity 80 720 > th dose dependent rect. 8 10
4 127.99 radiation 10 1440 < th dose dependent rect. 16 1
6 128.08 radiation 10 1440 < th dose independent rect. 15 1
7 128.09 humidity 70 1440 > th dose dependent rect. 8 6
9 128.17 humidity 70 720 > th dose dependent rect. 5 13
11 128.35 humidity 70 1440 > th dose dependent rect. 9 4
12 128.39 humidity 70 720 > th dose dependent sin 1 NA
16 128.65 humidity 70 720 > th dose dependent rect. 3 15
24 128.95 radiation 10 1440 < th dose dependent rect. 15 14
29 129.17 radiation 10 1440 < th dose dependent rect. 15 10
30 129.18 radiation 10 1440 < th dose dependent rect. 15 6
39 129.23 radiation 10 1440 < th dose dependent rect. 15 4
46 129.33 humidity 70 720 > th dose dependent rect. 1 17
58 129.52 humidity 90 10 < th dose dependent rect. 7 18
72 129.91 radiation 10 1440 < th dose dependent sin 14 NA
78 130.02 humidity 70 30 > th dose dependent rect. 6 14
120 130.69 humidity 70 720 > th dose dependent rect. 23 19
125 130.80 humidity 90 10 < th dose dependent rect. 7 22
135 130.92 radiation 10 1440 < th dose dependent rect. 13 18
182 131.20 wind 9 4320 > th dose independent rect. 20 8
190 131.27 humidity 80 270 > th dose dependent rect. 3 22
191 131.28 humidity 80 1440 > th dose independent rect. 9 3
195 131.34 wind 9 4320 < th dose independent rect. 19 9
229 131.61 atmosphere 1005 4320 > th dose independent rect. 7 2
251 131.75 wind 7 4320 > th dose dependent rect. 20 8
263 131.78 humidity 90 90 < th dose dependent rect. 20 23
276 131.82 humidity 80 1440 > th dose independent rect. 10 1
283 131.87 humidity 80 1440 < th dose independent rect. 9 3
295 131.96 radiation 10 1440 > th dose independent rect. 15 2
299 131.99 wind 9 4320 < th dose independent rect. 19 2
303 132.01 humidity 90 10 < th dose dependent sin 21 NA
308 132.04 atmosphere 1005 4320 < th dose independent rect. 7 2
314 132.08 humidity 90 270 < th dose independent rect. 7 20
316 132.08 humidity 90 30 < th dose dependent rect. 7 12
337 132.13 humidity 80 270 > th dose dependent rect. 22 23
343 132.15 wind 9 4320 > th dose independent rect. 20 4
354 132.19 humidity 70 90 > th dose dependent rect. 5 23
381 132.31 humidity 70 43200 < th dose independent rect. 23 8
404 132.40 humidity 50 10 > th dose dependent sin 21 NA
415 132.44 humidity 80 720 > th dose independent rect. 1 17
417 132.44 humidity 90 10 < th dose dependent rect. 7 14
431 132.48 humidity 80 720 > th dose independent rect. 3 16
432 132.49 humidity 80 720 > th dose independent rect. 5 14
435 132.50 humidity 50 90 > th dose dependent no NA NA
462 132.59 humidity 80 720 > th dose independent rect. 8 10
470 132.62 wind 9 4320 < th dose independent rect. 19 5
472 132.62 humidity 70 43200 > th dose independent rect. 23 8
492 132.70 humidity 80 720 > th dose independent sin 1 NA
493 132.70 humidity 80 270 > th dose dependent no NA NA
511 132.74 wind 9 4320 > th dose dependent rect. 20 4
529 132.77 radiation 10 1440 < th dose dependent rect. 9 20
530 132.78 humidity 80 720 > th dose independent rect. 23 19
535 132.79 humidity 60 90 > th dose dependent rect. 15 23
539 132.81 humidity 80 1440 > th dose independent sin 3 NA
542 132.81 humidity 90 90 < th dose dependent no NA NA
576 132.86 humidity 70 270 > th dose dependent rect. 8 23
577 132.86 humidity 60 90 > th dose dependent rect. 13 23
586 132.89 atmosphere 995 14400 > th dose independent rect. 15 7
593 132.91 humidity 80 720 < th dose independent rect. 22 20
596 132.91 radiation 10 1440 < th dose dependent rect. 9 12
614 132.93 radiation 10 1440 < th dose dependent rect. 9 18
624 132.94 humidity 90 720 < th dose dependent rect. 22 20
626 132.95 radiation 10 1440 < th dose dependent rect. 9 10
636 132.97 humidity 80 1440 > th dose independent rect. 9 5
646 132.98 humidity 80 270 > th dose dependent rect. 13 23
648 132.99 atmosphere 995 14400 > th dose independent rect. 7 16
652 133.01 humidity 80 1440 > th dose independent rect. 8 7
653 133.01 atmosphere 995 14400 > th dose independent rect. 12 11
657 133.02 atmosphere 995 14400 > th dose independent rect. 14 9
670 133.04 atmosphere 995 14400 > th dose independent sin 20 NA
671 133.04 atmosphere 995 14400 < th dose independent sin 20 NA
674 133.04 atmosphere 995 14400 < th dose independent rect. 5 17
678 133.05 atmosphere 995 14400 < th dose independent rect. 14 9
698 133.07 atmosphere 995 14400 < th dose independent sin 0 NA
705 133.08 atmosphere 995 14400 < th dose independent rect. 4 15
716 133.09 atmosphere 995 14400 < th dose dependent rect. 5 17
720 133.10 wind 9 4320 > th dose independent rect. 20 1
721 133.10 atmosphere 995 14400 < th dose independent rect. 15 7
724 133.10 atmosphere 995 14400 < th dose dependent sin 22 NA
728 133.11 atmosphere 995 14400 > th dose independent sin 0 NA
734 133.11 humidity 80 43200 < th dose dependent rect. 6 1
738 133.12 humidity 50 270 > th dose dependent rect. 10 23
745 133.13 atmosphere 995 14400 < th dose dependent rect. 4 13
762 133.15 atmosphere 995 14400 < th dose independent rect. 4 11
763 133.15 humidity 80 720 < th dose independent rect. 6 13
798 133.18 atmosphere 995 14400 < th dose dependent rect. 14 9
807 133.19 atmosphere 995 14400 > th dose independent rect. 5 10
830 133.20 humidity 80 270 > th dose dependent rect. 15 23
854 133.22 humidity 80 1440 < th dose independent rect. 22 17
858 133.22 atmosphere 995 14400 < th dose dependent rect. 4 15
921 133.26 atmosphere 995 14400 < th dose dependent rect. 5 10
937 133.27 humidity 80 270 > th dose dependent rect. 19 23
961 133.30 atmosphere 995 14400 < th dose independent rect. 18 22
970 133.31 atmosphere 995 14400 > th dose independent rect. 18 22