Os08g0250900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0250900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.18 | 0.333 | 12.8 | -0.597 | 0.447 | -0.445 | 0.197 | 0.496 | -0.33 | 2.78 | 24.5 | 1263 | -- | -- |
| 50.52 | 0.331 | 12.7 | -0.446 | 0.455 | -0.416 | 0.124 | -- | -0.284 | 2.86 | 24.59 | 1262 | -- | -- |
| 50.3 | 0.33 | 12.8 | -0.585 | 0.448 | -0.442 | -- | 0.44 | -0.326 | 2.85 | 24.52 | 1262 | -- | -- |
| 50.58 | 0.331 | 12.7 | -0.446 | 0.451 | -0.413 | -- | -- | -0.281 | 2.84 | 24.58 | 1262 | -- | -- |
| 60.29 | 0.362 | 12.8 | -0.577 | -- | -0.588 | -- | 0.395 | -0.356 | -- | 24.8 | 1121 | -- | -- |
| 56.2 | 0.351 | 12.7 | -0.3 | 0.522 | -- | 0.152 | -- | -0.129 | 2.76 | -- | -- | -- | -- |
| 56.28 | 0.351 | 12.7 | -0.303 | 0.523 | -- | -- | -- | -0.13 | 2.79 | -- | -- | -- | -- |
| 60.59 | 0.363 | 12.7 | -0.469 | -- | -0.566 | -- | -- | -0.327 | -- | 24.77 | 1091 | -- | -- |
| 55.35 | 0.347 | 12.7 | -- | 0.468 | -0.31 | -- | -- | -0.198 | 2.87 | 24.5 | 1257 | -- | -- |
| 72.15 | 0.397 | 12.7 | -0.281 | -- | -- | -- | -- | -0.116 | -- | -- | -- | -- | -- |
| 58.7 | 0.358 | 12.7 | -- | 0.517 | -- | -- | -- | -0.096 | 2.79 | -- | -- | -- | -- |
| 65.93 | 0.378 | 12.7 | -- | -- | -0.457 | -- | -- | -0.238 | -- | 24.73 | 1065 | -- | -- |
| 74.23 | 0.402 | 12.7 | -- | -- | -- | -- | -- | -0.0853 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.28 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 2 | 47.33 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 5 | 47.41 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 11 | 47.46 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 13 | 47.47 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 19 | 47.47 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 20 | 47.47 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 25 | 47.49 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 26 | 47.49 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 76 | 47.53 | wind | 5.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 87 | 47.57 | wind | 5.0 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 89 | 47.58 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 114 | 47.63 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 152 | 47.79 | wind | 5.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 162 | 47.81 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 183 | 47.96 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 203 | 48.14 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 238 | 48.36 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 252 | 48.49 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 14 | 9 |
| 253 | 48.50 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 262 | 48.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 265 | 48.60 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 267 | 48.61 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 268 | 48.61 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 269 | 48.63 | wind | 7.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 275 | 48.67 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 13 | 7 |
| 310 | 48.92 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 19 | 6 |
| 334 | 48.97 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 359 | 49.04 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 384 | 49.10 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 7 |
| 395 | 49.14 | wind | 5.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 398 | 49.14 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 412 | 49.17 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 7 |
| 422 | 49.19 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 434 | 49.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 7 |
| 444 | 49.25 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 21 |
| 459 | 49.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 478 | 49.30 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 20 |
| 501 | 49.33 | wind | 5.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 502 | 49.33 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 526 | 49.36 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 623 | 49.54 | wind | 5.0 | 14400 | < th | dose independent | rect. | 16 | 14 |
| 633 | 49.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 649 | 49.59 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 8 |
| 664 | 49.62 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 665 | 49.63 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 666 | 49.63 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 685 | 49.65 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 709 | 49.68 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 754 | 49.74 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 784 | 49.76 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 795 | 49.77 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 826 | 49.79 | wind | 5.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 884 | 49.84 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 887 | 49.84 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 937 | 49.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 952 | 49.89 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 982 | 49.92 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |