BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0250900 Os08g0250900|AK120066
(972 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0250900 Conserved hypothetical protein 1598 0.0
Os02g0788600 Clp, N terminal domain containing protein 319 6e-87
Os12g0104300 Clp, N terminal domain containing protein 107 4e-23
Os04g0298700 Clp, N terminal domain containing protein 86 1e-16
>Os08g0250900 Conserved hypothetical protein
Length = 972
Score = 1598 bits (4138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 814/962 (84%), Positives = 814/962 (84%)
Query: 11 HPLHCRALELCFSVALDRLPXXXXXXXXXXXXXXSPPVSNXXXXXXXXXXXXXXXGCPEA 70
HPLHCRALELCFSVALDRLP SPPVSN GCPEA
Sbjct: 11 HPLHCRALELCFSVALDRLPAAAAAAAAAHGAGASPPVSNALVAALKRAQAQQRRGCPEA 70
Query: 71 AQQPLLAVKVELEQLVLSILDDPSVSRVMREASFSSAAVKSIIEQXXXXXXXXXXXXXXX 130
AQQPLLAVKVELEQLVLSILDDPSVSRVMREASFSSAAVKSIIEQ
Sbjct: 71 AQQPLLAVKVELEQLVLSILDDPSVSRVMREASFSSAAVKSIIEQSLSAPSPCPSAAAST 130
Query: 131 XXXXXXXXXXXXXXXXXXXXXNAYLNPRLXXXXXXXXXXXXXXXXXXRKVIDVMLKPTRR 190
NAYLNPRL RKVIDVMLKPTRR
Sbjct: 131 TTAGPGPLSPSPSPLPRAGAANAYLNPRLAAAAAVASGGGGGGGDDARKVIDVMLKPTRR 190
Query: 191 NPVLVGDAGPDAVLKEAIRRIPTAGFPALAGAKVLPLEAEXXXXXXXXXXXXXRIGDLGA 250
NPVLVGDAGPDAVLKEAIRRIPTAGFPALAGAKVLPLEAE RIGDLGA
Sbjct: 191 NPVLVGDAGPDAVLKEAIRRIPTAGFPALAGAKVLPLEAELAKLAGDKAAMAARIGDLGA 250
Query: 251 VVERLLGEHGGVVLDLGDLKWLVDXXXXXXXXXXXXXXXEMGRLLRRFGRAGVWAVCTAA 310
VVERLLGEHGGVVLDLGDLKWLVD EMGRLLRRFGRAGVWAVCTAA
Sbjct: 251 VVERLLGEHGGVVLDLGDLKWLVDGPAAAASEGGKAAVAEMGRLLRRFGRAGVWAVCTAA 310
Query: 311 CTTYLRCKVYHPGMEAEWDLHAVPXXXXXXXXXXXXXXXXXXXXXXXILNSSMGMLSPAL 370
CTTYLRCKVYHPGMEAEWDLHAVP ILNSSMGMLSPAL
Sbjct: 311 CTTYLRCKVYHPGMEAEWDLHAVPIARGGAPIAAAAAGSALRPGGSGILNSSMGMLSPAL 370
Query: 371 RPMPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYERELAKLEAEQTDKPASRPEAAKPG 430
RPMPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYERELAKLEAEQTDKPASRPEAAKPG
Sbjct: 371 RPMPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYERELAKLEAEQTDKPASRPEAAKPG 430
Query: 431 LPHWLQLSNDQNKAKEQELKLKRSKDELERKWRETCARIHSACPMAPALSVPLATFTPRP 490
LPHWLQLSNDQNKAKEQELKLKRSKDELERKWRETCARIHSACPMAPALSVPLATFTPRP
Sbjct: 431 LPHWLQLSNDQNKAKEQELKLKRSKDELERKWRETCARIHSACPMAPALSVPLATFTPRP 490
Query: 491 PVEPKLGVARGAAVPTLKMNPSWEKPSVAPTLELRKSPPASPVKTDLVLCRLDPGTNPAV 550
PVEPKLGVARGAAVPTLKMNPSWEKPSVAPTLELRKSPPASPVKTDLVLCRLDPGTNPAV
Sbjct: 491 PVEPKLGVARGAAVPTLKMNPSWEKPSVAPTLELRKSPPASPVKTDLVLCRLDPGTNPAV 550
Query: 551 ENEQKESCEGLTALQKAKIAGISDIESFKRLLKGLTEKVSWXXXXXXXXXXXXXXCRSGS 610
ENEQKESCEGLTALQKAKIAGISDIESFKRLLKGLTEKVSW CRSGS
Sbjct: 551 ENEQKESCEGLTALQKAKIAGISDIESFKRLLKGLTEKVSWQSDAASAIAAVVIQCRSGS 610
Query: 611 GKRRNVGTRGDMWLLFVGPDQAGKRKMVNALSELMANTRPVVVNFGGDSRLGRVGNDGPN 670
GKRRNVGTRGDMWLLFVGPDQAGKRKMVNALSELMANTRPVVVNFGGDSRLGRVGNDGPN
Sbjct: 611 GKRRNVGTRGDMWLLFVGPDQAGKRKMVNALSELMANTRPVVVNFGGDSRLGRVGNDGPN 670
Query: 671 MGFWGKTALDRVTEAVRQNPFSVIVLEGIDQVDVVVHGKIKRAMETGRLPDSRGREVSLG 730
MGFWGKTALDRVTEAVRQNPFSVIVLEGIDQVDVVVHGKIKRAMETGRLPDSRGREVSLG
Sbjct: 671 MGFWGKTALDRVTEAVRQNPFSVIVLEGIDQVDVVVHGKIKRAMETGRLPDSRGREVSLG 730
Query: 731 NVIFVLTTNWVPEELKGSNVETLLRGEERMLESTSSSWQLELSIGDKQVKHRADWLCDDV 790
NVIFVLTTNWVPEELKGSNVETLLRGEERMLESTSSSWQLELSIGDKQVKHRADWLCDDV
Sbjct: 731 NVIFVLTTNWVPEELKGSNVETLLRGEERMLESTSSSWQLELSIGDKQVKHRADWLCDDV 790
Query: 791 RPAKLAKELSSSHGLSLDLNLAVGALDDTEGSHNSSDVSVEQEQEKGQLAVKRSTPAPGS 850
RPAKLAKELSSSHGLSLDLNLAVGALDDTEGSHNSSDVSVEQEQEKGQLAVKRSTPAPGS
Sbjct: 791 RPAKLAKELSSSHGLSLDLNLAVGALDDTEGSHNSSDVSVEQEQEKGQLAVKRSTPAPGS 850
Query: 851 DILELVDDAIVFRPVDFTPFRKTVTDCISAKFESVMGSSSSFRIDEDAVDWMVGSVWLTD 910
DILELVDDAIVFRPVDFTPFRKTVTDCISAKFESVMGSSSSFRIDEDAVDWMVGSVWLTD
Sbjct: 851 DILELVDDAIVFRPVDFTPFRKTVTDCISAKFESVMGSSSSFRIDEDAVDWMVGSVWLTD 910
Query: 911 EKIEDWAEKVLKPSIERLWHNVKHDSGRSIIRLTAVAAKALPRWGGGREGLPVAVTIAID 970
EKIEDWAEKVLKPSIERLWHNVKHDSGRSIIRLTAVAAKALPRWGGGREGLPVAVTIAID
Sbjct: 911 EKIEDWAEKVLKPSIERLWHNVKHDSGRSIIRLTAVAAKALPRWGGGREGLPVAVTIAID 970
Query: 971 GM 972
GM
Sbjct: 971 GM 972
>Os02g0788600 Clp, N terminal domain containing protein
Length = 965
Score = 319 bits (818), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 311/1017 (30%), Positives = 440/1017 (43%), Gaps = 183/1017 (17%)
Query: 11 HPLHCRALELCFSVALDRLPXXXXXXXXXXXXXXSPPVSNXXXXXXXXXXXXXX---XGC 67
HPL CRAL+LCF+VALDRLP +PP+SN G
Sbjct: 75 HPLRCRALDLCFAVALDRLPTSTEHQHHHA----APPLSNALAAALKRAYAHHRRIGSGV 130
Query: 68 PEAAQQPLLAVKVELEQLVLSILDDPSVSRVMREASFSSAAVKSIIEQXXXXXXXXXXXX 127
EA +V + LVL+ILDDPSV+RVMREASFSS AVK+ + +
Sbjct: 131 VEADDH-----RVGVPHLVLAILDDPSVARVMREASFSSTAVKAAMLRSLSDPAAPDS-- 183
Query: 128 XXXXXXXXXXXXXXXXXXXXXXXXNAYLNPRLXXXXXXXXXXXXXXXXXXRKVIDVMLKP 187
Y+N R+ K +
Sbjct: 184 ------------------------GVYVNARVLHRQVSHREEEVNKVVEVLK------RG 213
Query: 188 TRRNPVLVGDA-GPDAVLKEAIRRIPTAGFPALAGAKVLPLEAEX-XXXXXXXXXXXXRI 245
+RNPVLVGD DAV++E + I L A+V+ + E +I
Sbjct: 214 KKRNPVLVGDTVDVDAVVQEVVTMIQRQ---RLGNARVISFQREFGDLVDLDRAELAAKI 270
Query: 246 GDLGAVVERLL----GEHGGVVLDLGDLKWLVDXXXXX----------XXXXXXXXXXEM 291
+LG + L GVV++LG+L+WLV+ EM
Sbjct: 271 KELGEAIRSELLSPASRSAGVVVNLGNLQWLVEERCVAPGEQEKRRDVVLDTARAAVAEM 330
Query: 292 GRLLRRFGR--AGVWAVCTAACTTYLRCKVYHPGMEAEWDLHAVPXXXXXXXXXXXXXXX 349
R+LR+ G VW + TA C TYL+C+VYHP +E+EWDL AVP
Sbjct: 331 ARILRQSGEREHRVWVIGTATCATYLKCQVYHPSLESEWDLQAVPITPRPPPPPPSSLGL 390
Query: 350 XXXXXXXXILNSSMGMLSPALRPMPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYEREL 409
+N + S + +T +A++ + P++C C YERE
Sbjct: 391 SPSVNG---VNRGILSSSVEVLSSAMTTSAMQ----------SRSPSLCSACLDGYERER 437
Query: 410 AKLEA-------EQTDKPASR------PEAAKPGLPHWLQLSNDQNKAKEQELKLKRSKD 456
A + + T++P S+ P +A+P Q+KA+E D
Sbjct: 438 ADMASSPGCGALHATEQPMSQWLQIGTPSSARP------PFDRAQDKARE--------AD 483
Query: 457 ELERKWRETCARIHSACPMAPALSVPLATFTPRPPVEPKLGVARGAAV-PTLKMNPSWEK 515
EL R+W + CA++HS P + T GA+V ++ P
Sbjct: 484 ELRRRWLDRCAQLHSHGGGGCGGGRPSSMVT--------CSEWNGASVLANMQAIP---- 531
Query: 516 PSVAPTLELRKSPPASPVKTDLVLCRLDPGTNPAVENEQKESCEGLTALQKAKIAGISDI 575
V P + PA+ V TDL L G A ++ D
Sbjct: 532 --VRPPPPAAAAAPAAAVDTDLAL--------------------GPAASTASRPPAYCDT 569
Query: 576 ESFKRLLKGLTEKVSWXXXXXXXXXXXXXXCRSGSGKRRNVG-TRGDMWLLFVGPDQAGK 634
+ K L+K LTE V W RSG KRR +G TR D W+LF G D AGK
Sbjct: 570 DE-KLLVKRLTEAVRWQPEAAAAVAAAITKARSGERKRRGMGPTRADTWVLFSGHDVAGK 628
Query: 635 RKMVNALSELMANTRPVVVNFGGDSRLGRVGNDG-PNMGFWGKTALDRVTEAVRQNPFSV 693
KM ALS + T V + G N G P G+TALD V +A+R NP V
Sbjct: 629 TKMAEALSMSVFGTNAVALRLAG--------NGGEPIASCRGRTALDCVADAIRANPLRV 680
Query: 694 IVLEGIDQVD--VVVHGKIKRAMETGRLPDSRGREVSLGNVIFVLTTNWVPEELKGSNVE 751
IVL+G D D VV I RA+E+GRL DSRGR+V+LG IFV+ + ++
Sbjct: 681 IVLDGFDHHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIFVVMS-----------LD 729
Query: 752 TLLRGEERMLESTSSSWQLELSIGDKQVKHRADWLCDDVRPAKLAKELSSSHGLSLDLNL 811
R +E + T S W LEL + + K R + D + K S L LDLNL
Sbjct: 730 DTRRCQEDH-QFTDSPWNLELRVRNNARKRRPEPQPLDGAGDRRLKPRKDSPPLHLDLNL 788
Query: 812 AV--GALDDT-----EGSHNSSDVSVEQEQEKGQ---LAVKRSTPAPGSDILELVDDAIV 861
++ DD E ++SSD++VE EQE GQ A K S P+ S++ + VD +V
Sbjct: 789 SMCEDHTDDDDSGGEESRNSSSDLTVEHEQEYGQPAAAAAKFSAPSSFSELTKAVDATVV 848
Query: 862 FRPVDFTPFRKTVTDCISAKFESVMGSSS--SFRIDEDAVDWMVGSVWLTDE---KIEDW 916
F+PVDF P +++V+D +SAK G+ + S +D+ +D + G+ W E +E W
Sbjct: 849 FKPVDFGPLKRSVSDVVSAKLGDAAGAGAGLSVHVDDGVLDRLAGAAWTAGESATSLEAW 908
Query: 917 AEKVLKPSIERLWHNVKHD--SGRSIIRLTAVAAKALPRWGGGREGLPVAVTIAIDG 971
A++VL P+I +L ++ + G + + L+AV R G E P +VT+A+DG
Sbjct: 909 ADEVLCPTIRQLKRSLSANDVDGATTVSLSAVEGSGGRRRKDG-EVFPTSVTVAVDG 964
>Os12g0104300 Clp, N terminal domain containing protein
Length = 1129
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 101/406 (24%), Positives = 174/406 (42%), Gaps = 56/406 (13%)
Query: 573 SDIESFKRLLKGLTEKVSWXXXXXXXXXXXXXXCRSGSGKRRNVGTRGDMWLLFVGPDQA 632
SD+ ++K L++ L + V CRS +R +R D+WL F G D
Sbjct: 718 SDLSNYKLLVERLFKVVGRQEEAVSAICESIVRCRSTESRRG--PSRNDIWLCFHGSDSM 775
Query: 633 GKRKMVNALSELMANTRPVVVNFGGDSRLGRVGNDGPNMGFWGKTALDRVTEAVRQNPFS 692
K+++ AL+ELM ++ ++ D L D + F GKT +D + E + + S
Sbjct: 776 AKKRIAVALAELMHGSKENLIYL--DLNL----QDWDDSSFRGKTGIDCIVEQLSKKRRS 829
Query: 693 VIVLEGIDQVDVVVHGKIKRAMETGRLPDSRGREVSLGNVIFVLTTNWVPEELKGSNVET 752
V+ L+ ID+ D +V + A+++GR D RG+ V + + I VL+ + + G E
Sbjct: 830 VLFLDNIDRADCLVQDSLSDAIKSGRFQDMRGKVVDINDSIVVLSRSMIHGSKNGLE-EG 888
Query: 753 LLRGEERMLESTSSSWQL----------------------------ELSIGDKQVKHRAD 784
L EE++L + ++ + S+ + R
Sbjct: 889 LSFSEEKILATRGHRLKILVEPGRAITSGCPSGKVVVSPRHFLTKIQASLCSGSISKRKL 948
Query: 785 WLCDDVR-----PAKLAKELSSSHGLSLDLNLAVGALDDTEGSHNSSDVSVEQEQEKGQL 839
+ DD P+ L K L + + DLNL V D + ++ D S E G
Sbjct: 949 SMSDDQEKLQESPSSL-KRLHRTSSIPFDLNLPV----DEDEPFDADDDSSSHENSYGN- 1002
Query: 840 AVKRSTPAPGSDILELVDDAIVFRPVDFTPFRKTVTDCISAKFESVMGSSSSFRIDEDAV 899
++S A +L VD +I F+P DF + S +G+ ID A+
Sbjct: 1003 -TEKSIDA----LLHSVDGSINFKPFDFDKLADDMLQEFSNILRKNLGAECMLEIDVGAM 1057
Query: 900 DWMVGSVWLTDEK--IEDWAEKVLKPSIERLWHNVKHDSGRSIIRL 943
+ ++ + W +++K ++ W E+V S++ L KH S S +RL
Sbjct: 1058 EQILAAAWKSEDKGPVQTWLEQVFARSLDELKLKYKHVSS-STLRL 1102
>Os04g0298700 Clp, N terminal domain containing protein
Length = 517
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 67/139 (48%), Gaps = 35/139 (25%)
Query: 11 HPLHCRALELCFSVALDRLPXXXXXX---------------XXXXXXXXSPPVSNXXXXX 55
HPL CRALELCF+VAL+RLP +P +SN
Sbjct: 82 HPLQCRALELCFNVALNRLPTSAPHSPPPSSSAPSGAVAPPFASSLIQPNPTLSNALVAA 141
Query: 56 XXXXXXXXXXGCPEAA--------------------QQPLLAVKVELEQLVLSILDDPSV 95
GC E QQPLLA+KVEL+QL++SILDDPSV
Sbjct: 142 LKRAQANQRRGCVELQQQPPPPPPPPPPPVAATAQQQQPLLAIKVELDQLIISILDDPSV 201
Query: 96 SRVMREASFSSAAVKSIIE 114
SRVMREA FSS+ VKS +E
Sbjct: 202 SRVMREAGFSSSTVKSNLE 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 30,253,484
Number of extensions: 1252498
Number of successful extensions: 4758
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 4745
Number of HSP's successfully gapped: 6
Length of query: 972
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 862
Effective length of database: 11,292,261
Effective search space: 9733928982
Effective search space used: 9733928982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)