BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0664700 Os11g0664700|AK100084
(192 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0664700 Conserved hypothetical protein 387 e-108
Os02g0789700 Nucleotide-binding, alpha-beta plait domain co... 299 6e-82
Os02g0721400 Conserved hypothetical protein 292 9e-80
Os06g0157600 170 5e-43
Os08g0322400 Nucleotide-binding, alpha-beta plait domain co... 165 2e-41
Os05g0254300 98 4e-21
Os04g0181200 82 2e-16
Os02g0473100 75 4e-14
Os02g0318300 66 1e-11
>Os11g0664700 Conserved hypothetical protein
Length = 192
Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/192 (96%), Positives = 186/192 (96%)
Query: 1 HGQGGGELRQDHSRPVHQDRSDAREAFRDTKVSTEAGSTNLVDTAKLGMGTTIECSMKCE 60
HGQGGGELRQDHSRPVHQDRSDAREAFRDTKVSTEAGSTNLVDTAKLGMGTTIECSMKCE
Sbjct: 1 HGQGGGELRQDHSRPVHQDRSDAREAFRDTKVSTEAGSTNLVDTAKLGMGTTIECSMKCE 60
Query: 61 NQLADDDDGKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGV 120
NQLADDDDGKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGV
Sbjct: 61 NQLADDDDGKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGV 120
Query: 121 VGLSFVSSKLEVLYGCFDRSLEYTASXXXXXXWRAAIPWNKAEMTSGSRPLPWPDPQLCQ 180
VGLSFVSSKLEVLYGCFDRSLEYTAS WRAAIPWNKAEMTSGSRPLPWPDPQLCQ
Sbjct: 121 VGLSFVSSKLEVLYGCFDRSLEYTASPPPVPPWRAAIPWNKAEMTSGSRPLPWPDPQLCQ 180
Query: 181 GSGGVVVKLLQL 192
GSGGVVVKLLQL
Sbjct: 181 GSGGVVVKLLQL 192
>Os02g0789700 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 451
Score = 299 bits (766), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 149/191 (78%), Positives = 155/191 (81%)
Query: 1 HGQGGGELRQDHSRPVHQDRSDAREAFRDTKVSTEAGSTNLVDTAKLGMGTTIECSMKCE 60
H + L +D +R V ++ +VSTEAGSTN VDTAKLGMGTTIECSMKCE
Sbjct: 251 HTKVDLSLSKDSTRDVAALSANTDPTSIALEVSTEAGSTNHVDTAKLGMGTTIECSMKCE 310
Query: 61 NQLADDDDGKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGV 120
NQLADDD GKDMAKEEWMELMEVDT FT MYLCFRDP LIINAIPPRNWSWCLSR YFGV
Sbjct: 311 NQLADDDGGKDMAKEEWMELMEVDTKFTTMYLCFRDPLLIINAIPPRNWSWCLSRDYFGV 370
Query: 121 VGLSFVSSKLEVLYGCFDRSLEYTASXXXXXXWRAAIPWNKAEMTSGSRPLPWPDPQLCQ 180
VGLSFVS KLEVLYGCFDRS EYTAS WRAAIP NKAEMTSGSRPLPW DPQLCQ
Sbjct: 371 VGLSFVSLKLEVLYGCFDRSSEYTASPPPVPPWRAAIPRNKAEMTSGSRPLPWLDPQLCQ 430
Query: 181 GSGGVVVKLLQ 191
GSGGVVVKLLQ
Sbjct: 431 GSGGVVVKLLQ 441
>Os02g0721400 Conserved hypothetical protein
Length = 440
Score = 292 bits (748), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 143/181 (79%), Positives = 151/181 (83%)
Query: 8 LRQDHSRPVHQDRSDAREAFRDTKVSTEAGSTNLVDTAKLGMGTTIECSMKCENQLADDD 67
L +D +R V ++ +VSTEAGSTN VDTAKLGMGTTIECSMKCENQLADDD
Sbjct: 86 LSKDSTRDVAALSANTDPTSIALEVSTEAGSTNHVDTAKLGMGTTIECSMKCENQLADDD 145
Query: 68 DGKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGVVGLSFVS 127
GKDMAKEEWMELMEVDT FT MYLCFRDP LIINAIPPRNWSWCLSR YFGVV LSFVS
Sbjct: 146 GGKDMAKEEWMELMEVDTKFTTMYLCFRDPLLIINAIPPRNWSWCLSRDYFGVVCLSFVS 205
Query: 128 SKLEVLYGCFDRSLEYTASXXXXXXWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVV 187
KL+VLYGCFDRS EYTAS WRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGG+VV
Sbjct: 206 LKLQVLYGCFDRSSEYTASPPPVPPWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGMVV 265
Query: 188 K 188
+
Sbjct: 266 Q 266
>Os06g0157600
Length = 863
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 113/179 (63%), Gaps = 2/179 (1%)
Query: 9 RQDHSRPVHQDRSDAREAFRDTKVSTEAGSTNLVDTAKLGMGTTIECSMKCENQLADDDD 68
+D +R V + ++ +VS EAG TN VD AKLGMGTTIECSMK +NQL DDD
Sbjct: 248 NKDSTRDVAELSANTSPTTIALEVSAEAGPTNHVDLAKLGMGTTIECSMKGKNQLVDDD- 306
Query: 69 GKDMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGVVGLSFVSS 128
GKDMA +E EL+EVDT FT++ LCFRDP+L +NAIP R CLS GV LS V S
Sbjct: 307 GKDMANDERTELIEVDTKFTSVNLCFRDPWLALNAIPSRILIGCLSHD-LGVNNLSLVPS 365
Query: 129 KLEVLYGCFDRSLEYTASXXXXXXWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVV 187
LEV Y CF AS WR A+PW ++ SGSRP PWPDP L G+G VVV
Sbjct: 366 TLEVPYHCFVLGSVCRASSPPVPLWRVAVPWYSDQVFSGSRPSPWPDPWLYSGNGSVVV 424
>Os08g0322400 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 899
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 104/157 (66%), Gaps = 2/157 (1%)
Query: 31 KVSTEAGSTNLVDTAKLGMGTTIECSMKCENQLADDDDGKDMAKEEWMELMEVDTMFTAM 90
+VS EAG TN VD+AKLGMGTTIECSMK +NQL DDD GKDMA +E EL+EVDT FT++
Sbjct: 269 EVSAEAGPTNHVDSAKLGMGTTIECSMKGKNQLVDDD-GKDMANDERTELIEVDTKFTSV 327
Query: 91 YLCFRDPFLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKLEVLYGCFDRSLEYTASXXXX 150
LCFRDP+L +NAIP R CLS GV LS V S LEV Y CF S
Sbjct: 328 NLCFRDPWLALNAIPSRILIGCLSHD-LGVNSLSLVPSTLEVPYHCFVLGSVCRVSSPPV 386
Query: 151 XXWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVV 187
WR A+P ++ SGSRP PWPDP L GSG VVV
Sbjct: 387 PLWRVAVPLYSDQVYSGSRPSPWPDPWLHSGSGSVVV 423
>Os05g0254300
Length = 626
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 85/172 (49%), Gaps = 23/172 (13%)
Query: 11 DHSRPVHQDRSDAREAFRDTKVSTEAGSTNLVDTAKLGMGTTIECSMKCENQLADDDDGK 70
D +R V ++ +V EA S +LVDT + M T +C K Q+ +DDD
Sbjct: 251 DITRVVAVTSTNTESVPNTLEVRKEANSISLVDTNESCMATPTKCLTKGNEQMINDDD-D 309
Query: 71 DMAKEEWMELMEVDTMFTAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKL 130
DMA E+ +E EV++ FT F +P +FG +S V
Sbjct: 310 DMATEDLVEHTEVNSKFTLRQTSFNNP-------------------WFGHQAISVV---Y 347
Query: 131 EVLYGCFDRSLEYTASXXXXXXWRAAIPWNKAEMTSGSRPLPWPDPQLCQGS 182
Y C DRS EYTA WRA IPWN+AEMT GSRPLP PDPQL QGS
Sbjct: 348 LTCYSCLDRSSEYTARSPLVPRWRAVIPWNQAEMTFGSRPLPRPDPQLSQGS 399
>Os04g0181200
Length = 646
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 39/52 (75%)
Query: 134 YGCFDRSLEYTASXXXXXXWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGV 185
+ C DRS EYTAS WRA IPWN+AEMT GSRPLPWPDPQL QGS GV
Sbjct: 229 WSCLDRSSEYTASSPPVPPWRAVIPWNQAEMTFGSRPLPWPDPQLSQGSEGV 280
>Os02g0473100
Length = 709
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 80/164 (48%), Gaps = 22/164 (13%)
Query: 30 TKVSTEAGSTNLVDTAKLGMGTT--IECSMKCENQLADDDDGKDMAKEEWMELMEVDTMF 87
++VS EA ST+LV+T KL M + K + + D D G M ++ +E +VDT
Sbjct: 273 SEVSNEAKSTHLVNTNKLSMVKVKPTKGLTKSKKEKVDGDAG-GMVTDDCVEFTKVDTKL 331
Query: 88 TAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKLEVLYGCFDRSLEYTASX 147
++ F D L + C S Y GV L VSS+ EV Y F ++TA
Sbjct: 332 IYVFRPFTDVSLAL----------CQSN-YIGVTNLPVVSSECEVRYDDFVSGADFTARP 380
Query: 148 XXXXXWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVVKLLQ 191
WR A+P + R LPWPD QGSGGVVVKLLQ
Sbjct: 381 QVVPPWRLAVPLD-------FRFLPWPD-IFNQGSGGVVVKLLQ 416
>Os02g0318300
Length = 728
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 78/164 (47%), Gaps = 22/164 (13%)
Query: 30 TKVSTEAGSTNLVDTAKLGMGTT--IECSMKCENQLADDDDGKDMAKEEWMELMEVDTMF 87
++VS EA ST+LV+T KL M T + K + + D D G M + ++ +VDT
Sbjct: 234 SEVSNEANSTHLVNTNKLSMVTVKPTKGLTKSKKEKVDGDVG-GMVTDNCVKFTKVDTKL 292
Query: 88 TAMYLCFRDPFLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKLEVLYGCFDRSLEYTASX 147
++ F D L + C S + V L VSS+ EV F ++TA
Sbjct: 293 IFVFRPFTDVCLTL----------CRSN-HIVVTNLPVVSSECEVCCDDFVSGADFTARP 341
Query: 148 XXXXXWRAAIPWNKAEMTSGSRPLPWPDPQLCQGSGGVVVKLLQ 191
WR A+P + R LPWPD QGSGGVVVKLLQ
Sbjct: 342 QVVPPWRLAVPLD-------FRFLPWPD-IFNQGSGGVVVKLLQ 377
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,309,951
Number of extensions: 287343
Number of successful extensions: 820
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 9
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)