Os08g0322400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os08g0322400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 256.87 | 0.753 | 6.36 | 4.06 | 3.13 | 1.48 | 0.1 | -2.43 | 0.564 | 20 | 20 | 175 | -- | -- |
| 278.45 | 0.777 | 6.41 | 3.77 | 3.18 | 1.78 | 0.265 | -- | 0.501 | 20 | 19.9 | 170 | -- | -- |
| 255.8 | 0.745 | 6.35 | 4.06 | 3.12 | 1.47 | -- | -2.36 | 0.582 | 20 | 20.21 | 172 | -- | -- |
| 278.57 | 0.777 | 6.4 | 3.74 | 3.16 | 1.8 | -- | -- | 0.527 | 19.9 | 20 | 170 | -- | -- |
| 761.08 | 1.28 | 6.28 | 4.01 | -- | 1.69 | -- | -2.02 | 0.575 | -- | 20.37 | 41 | -- | -- |
| 377.44 | 0.911 | 6.47 | 3.2 | 3.14 | -- | -0.154 | -- | 0.197 | 20.3 | -- | -- | -- | -- |
| 377.51 | 0.91 | 6.47 | 3.2 | 3.14 | -- | -- | -- | 0.197 | 20.3 | -- | -- | -- | -- |
| 782.13 | 1.3 | 6.32 | 3.65 | -- | 1.79 | -- | -- | 0.494 | -- | 20.33 | 38 | -- | -- |
| 610.19 | 1.15 | 6.52 | -- | 3.12 | 0.981 | -- | -- | -0.00246 | 20.1 | 20.3 | 120 | -- | -- |
| 924.15 | 1.42 | 6.39 | 3.18 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 647.42 | 1.19 | 6.55 | -- | 3.12 | -- | -- | -- | -0.159 | 20.4 | -- | -- | -- | -- |
| 1110.4 | 1.56 | 6.42 | -- | -- | 1.25 | -- | -- | 0.0325 | -- | 20.7 | 15 | -- | -- |
| 1191.01 | 1.61 | 6.47 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.88 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 21 |
| 6 | 253.39 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 7 | 253.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 15 | 254.49 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 16 | 254.50 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 18 | 254.67 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 24 | 255.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 32 | 255.82 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 18 |
| 34 | 255.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 35 | 255.92 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 37 | 255.96 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 10 |
| 62 | 256.51 | temperature | 20 | 4320 | < th | dose dependent | sin | 4 | NA |
| 65 | 256.55 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 23 |
| 75 | 256.73 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 78 | 256.76 | humidity | 50 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 89 | 256.82 | humidity | 50 | 43200 | < th | dose independent | sin | 12 | NA |
| 101 | 257.05 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 18 |
| 119 | 257.17 | humidity | 50 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 123 | 257.22 | humidity | 50 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 132 | 257.27 | humidity | 50 | 43200 | > th | dose independent | sin | 12 | NA |
| 137 | 257.28 | humidity | 60 | 43200 | < th | dose dependent | sin | 12 | NA |
| 155 | 257.43 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 156 | 257.43 | humidity | 50 | 43200 | < th | dose dependent | sin | 8 | NA |
| 170 | 257.50 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 174 | 257.52 | temperature | 20 | 270 | < th | dose independent | rect. | 9 | 23 |
| 193 | 257.61 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 262 | 257.90 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 265 | 257.91 | temperature | 20 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 270 | 257.94 | temperature | 20 | 4320 | < th | dose dependent | rect. | 8 | 23 |
| 272 | 257.97 | temperature | 20 | 4320 | < th | dose dependent | rect. | 11 | 23 |
| 274 | 257.98 | humidity | 50 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 319 | 258.17 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 423 | 258.68 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 466 | 258.84 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 469 | 258.85 | humidity | 60 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 505 | 258.97 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 515 | 259.01 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 535 | 259.08 | temperature | 20 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 553 | 259.20 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 568 | 259.26 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 577 | 259.31 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 581 | 259.32 | humidity | 50 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 660 | 259.64 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 672 | 259.67 | temperature | 20 | 270 | < th | dose independent | rect. | 19 | 23 |
| 673 | 259.67 | temperature | 20 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 685 | 259.72 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 688 | 259.73 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 706 | 259.79 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 725 | 259.88 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 772 | 260.05 | temperature | 20 | 270 | < th | dose independent | rect. | 13 | 23 |
| 782 | 260.08 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 18 |
| 789 | 260.09 | temperature | 20 | 270 | < th | dose independent | rect. | 3 | 23 |
| 791 | 260.10 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 809 | 260.10 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 924 | 260.34 | temperature | 20 | 30 | < th | dose independent | rect. | 10 | 22 |
| 944 | 260.45 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 950 | 260.47 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 985 | 260.59 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 987 | 260.60 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 23 |