Os02g0721400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0721400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.25 | 0.507 | 4.09 | 1.31 | 0.161 | 0.256 | -0.845 | 3.66 | 0.374 | 4.27 | 5.322 | 2251 | -- | -- |
| 123.83 | 0.518 | 4.2 | 0.466 | 0.374 | 0.597 | -0.343 | -- | 0.188 | 3.85 | 26.81 | 293 | -- | -- |
| 117.15 | 0.504 | 4.1 | 1.27 | 0.176 | 0.285 | -- | 3.76 | 0.356 | 2.89 | -35.9 | 1969 | -- | -- |
| 124.22 | 0.519 | 4.2 | 0.445 | 0.397 | 0.628 | -- | -- | 0.189 | 3.87 | 26.8 | 293 | -- | -- |
| 118.95 | 0.508 | 4.1 | 1.32 | -- | 0.268 | -- | 3.83 | 0.378 | -- | -20.87 | 2005 | -- | -- |
| 130.03 | 0.535 | 4.2 | 0.533 | 0.151 | -- | -0.841 | -- | 0.193 | 4.94 | -- | -- | -- | -- |
| 130.93 | 0.536 | 4.2 | 0.533 | 0.184 | -- | -- | -- | 0.197 | 2.19 | -- | -- | -- | -- |
| 124.5 | 0.52 | 4.18 | 0.414 | -- | 0.403 | -- | -- | 0.261 | -- | 32.75 | 1109 | -- | -- |
| 129.25 | 0.529 | 4.21 | -- | 0.449 | 0.73 | -- | -- | 0.141 | 3.94 | 26.61 | 293 | -- | -- |
| 132.95 | 0.539 | 4.2 | 0.541 | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
| 138.42 | 0.55 | 4.21 | -- | 0.194 | -- | -- | -- | 0.137 | 2.24 | -- | -- | -- | -- |
| 129.5 | 0.53 | 4.19 | -- | -- | 0.465 | -- | -- | 0.241 | -- | 32.4 | 1137 | -- | -- |
| 140.66 | 0.554 | 4.21 | -- | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 115.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 5 | 115.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 10 | 116.14 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 7 |
| 14 | 116.27 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 18 |
| 16 | 116.35 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 7 |
| 19 | 116.47 | wind | 7 | 270 | < th | dose independent | rect. | 10 | 23 |
| 20 | 116.48 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 36 | 116.66 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 15 |
| 38 | 116.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 12 |
| 39 | 116.69 | temperature | 15 | 1440 | > th | dose dependent | sin | 0 | NA |
| 40 | 116.69 | temperature | 20 | 1440 | > th | dose dependent | sin | 2 | NA |
| 42 | 116.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 16 |
| 193 | 116.81 | wind | 5 | 270 | < th | dose independent | rect. | 22 | 9 |
| 246 | 116.86 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 18 | 18 |
| 302 | 116.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 348 | 116.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 4 |
| 386 | 117.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 437 | 117.05 | temperature | 25 | 4320 | < th | dose dependent | rect. | 6 | 6 |
| 447 | 117.06 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 17 | 20 |
| 561 | 117.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 568 | 117.15 | atmosphere | 1015 | 10 | < th | dose independent | rect. | 20 | 18 |
| 620 | 117.19 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 699 | 117.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 723 | 117.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 744 | 117.31 | wind | 7 | 270 | < th | dose independent | rect. | 11 | 7 |
| 763 | 117.32 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 803 | 117.36 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 826 | 117.38 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 855 | 117.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 875 | 117.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 13 |
| 876 | 117.43 | temperature | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 897 | 117.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |