Os02g0789700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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Os02g0789700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleotide-binding, alpha-beta plait domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 245.79 | 0.737 | 2.94 | 0.383 | 0.0931 | 0.751 | 0.443 | 3.47 | -0.184 | 1.92 | 5.2 | 106 | -- | -- |
| 263.72 | 0.756 | 2.89 | 0.384 | 0.158 | 0.623 | -0.263 | -- | -0.146 | 1.82 | 6 | 90 | -- | -- |
| 244.09 | 0.728 | 2.92 | 0.395 | 0.0556 | 1.12 | -- | 3.98 | -0.157 | 1.25 | 6 | 93 | -- | -- |
| 263.45 | 0.756 | 2.89 | 0.35 | 0.135 | 0.518 | -- | -- | -0.105 | 0.643 | 5.996 | 90 | -- | -- |
| 244.15 | 0.728 | 2.94 | 0.365 | -- | 1.21 | -- | 4.58 | -0.178 | -- | 6 | 102 | -- | -- |
| 265.84 | 0.764 | 2.88 | 0.235 | 0.127 | -- | 0.395 | -- | -0.138 | 19.2 | -- | -- | -- | -- |
| 266.25 | 0.764 | 2.88 | 0.227 | 0.128 | -- | -- | -- | -0.138 | 19.4 | -- | -- | -- | -- |
| 263.81 | 0.756 | 2.87 | 0.315 | -- | 0.44 | -- | -- | -0.112 | -- | 5.9 | 90 | -- | -- |
| 265.91 | 0.759 | 2.88 | -- | 0.0881 | 0.341 | -- | -- | -0.131 | 21.6 | 5.9 | 108 | -- | -- |
| 267.12 | 0.764 | 2.88 | 0.224 | -- | -- | -- | -- | -0.14 | -- | -- | -- | -- | -- |
| 267.61 | 0.765 | 2.89 | -- | 0.126 | -- | -- | -- | -0.163 | 19.5 | -- | -- | -- | -- |
| 266.43 | 0.76 | 2.88 | -- | -- | 0.32 | -- | -- | -0.161 | -- | 6 | 108 | -- | -- |
| 268.45 | 0.765 | 2.88 | -- | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 231.20 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 16 | 2 |
| 2 | 231.28 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 8 | 238.65 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 16 | 2 |
| 23 | 242.68 | wind | 5.0 | 90 | > th | dose dependent | rect. | 14 | 21 |
| 28 | 244.10 | wind | 5.0 | 90 | > th | dose independent | rect. | 20 | 22 |
| 29 | 244.22 | wind | 5.0 | 90 | > th | dose dependent | sin | 18 | NA |
| 33 | 244.53 | wind | 5.0 | 90 | > th | dose independent | rect. | 14 | 22 |
| 34 | 244.57 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 16 | 3 |
| 35 | 244.58 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 36 | 244.60 | wind | 5.0 | 90 | > th | dose dependent | rect. | 20 | 22 |
| 48 | 244.90 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 76 | 244.90 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 108 | 244.94 | wind | 5.0 | 90 | > th | dose dependent | rect. | 10 | 17 |
| 110 | 244.98 | wind | 5.0 | 90 | > th | dose independent | rect. | 10 | 18 |
| 169 | 245.24 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 6 |
| 179 | 245.24 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 6 |
| 199 | 245.44 | wind | 5.0 | 90 | > th | dose independent | rect. | 24 | 22 |
| 204 | 245.53 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 14 | 1 |
| 248 | 245.57 | wind | 5.0 | 90 | > th | dose dependent | rect. | 24 | 22 |
| 281 | 245.82 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 14 | 3 |
| 282 | 245.82 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 286 | 245.85 | wind | 5.0 | 90 | > th | dose dependent | rect. | 10 | 12 |
| 288 | 245.87 | wind | 5.0 | 90 | > th | dose independent | sin | 18 | NA |
| 305 | 245.97 | wind | 5.0 | 90 | > th | dose dependent | no | NA | NA |
| 340 | 246.14 | wind | 5.0 | 90 | > th | dose dependent | rect. | 24 | 18 |
| 359 | 246.29 | wind | 5.0 | 90 | > th | dose independent | no | NA | NA |
| 363 | 246.30 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 365 | 246.32 | wind | 5.0 | 90 | > th | dose independent | rect. | 24 | 18 |
| 369 | 246.33 | wind | 5.0 | 90 | > th | dose independent | rect. | 10 | 12 |
| 371 | 246.33 | wind | 5.0 | 90 | > th | dose dependent | rect. | 10 | 8 |
| 398 | 246.67 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 23 |
| 410 | 246.77 | precipitation | 0.1 | 10 | > th | dose independent | sin | 20 | NA |
| 411 | 246.77 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 20 | NA |
| 413 | 246.81 | precipitation | 0.1 | 10 | < th | dose independent | sin | 20 | NA |
| 414 | 246.81 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 20 | NA |
| 448 | 247.00 | wind | 5.0 | 90 | < th | dose independent | rect. | 19 | 23 |
| 452 | 247.05 | wind | 1.0 | 90 | > th | dose dependent | rect. | 24 | 22 |
| 454 | 247.08 | wind | 5.0 | 90 | < th | dose independent | sin | 18 | NA |
| 458 | 247.10 | wind | 5.0 | 90 | > th | dose independent | rect. | 10 | 8 |
| 532 | 247.57 | wind | 5.0 | 90 | < th | dose independent | no | NA | NA |
| 561 | 247.72 | wind | 5.0 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 656 | 248.18 | wind | 5.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 734 | 248.71 | wind | 5.0 | 90 | < th | dose independent | rect. | 13 | 23 |
| 739 | 248.74 | wind | 5.0 | 90 | < th | dose independent | rect. | 11 | 14 |
| 773 | 248.87 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 837 | 249.49 | wind | 5.0 | 90 | < th | dose independent | rect. | 7 | 18 |
| 839 | 249.49 | wind | 5.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 841 | 249.50 | wind | 5.0 | 90 | > th | dose independent | rect. | 14 | 16 |
| 853 | 249.58 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 10 | 2 |
| 863 | 249.61 | temperature | 20.0 | 10 | < th | dose independent | rect. | 10 | 2 |
| 864 | 249.61 | wind | 5.0 | 90 | < th | dose independent | rect. | 9 | 16 |
| 870 | 249.64 | wind | 7.0 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 891 | 249.77 | wind | 5.0 | 90 | > th | dose dependent | rect. | 14 | 14 |
| 923 | 249.90 | wind | 5.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 925 | 249.91 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 9 | 4 |
| 963 | 250.03 | wind | 9.0 | 90 | < th | dose dependent | no | NA | NA |
| 982 | 250.08 | humidity | 90.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 984 | 250.08 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 10 | 1 |