BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0648400 Os11g0648400|AK073033
         (315 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0648400  Hypothetical protein                                595   e-170
Os11g0648200                                                      153   2e-37
Os10g0540300  Conserved hypothetical protein                       77   1e-14
Os10g0540900  Conserved hypothetical protein                       74   1e-13
Os12g0148600  Hypothetical protein                                 69   4e-12

>Os11g0648400 Hypothetical protein
          Length = 315

 Score =  595 bits (1535), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/315 (91%), Positives = 289/315 (91%)

Query: 1   MDRXXXXXXXXXXXXXXEFPGEAKITLRPDFXXXXXXXXXXXXRKSKRYAIQQSILYKEH 60
           MDR              EFPGEAKITLRPDF            RKSKRYAIQQSILYKEH
Sbjct: 1   MDRDAGGGGDPATGGPAEFPGEAKITLRPDFLLLQAAPLQAAARKSKRYAIQQSILYKEH 60

Query: 61  KRQSRHQLRGAQPSTSQKPRHAEAGSKTHVRQSVLYSERKRQPRHERGGTQPPTLLTASE 120
           KRQSRHQLRGAQPSTSQKPRHAEAGSKTHVRQSVLYSERKRQPRHERGGTQPPTLLTASE
Sbjct: 61  KRQSRHQLRGAQPSTSQKPRHAEAGSKTHVRQSVLYSERKRQPRHERGGTQPPTLLTASE 120

Query: 121 HDSTTVEPSRLKEASPSLSDELRELEEYRKTHTFSSFEDAIHYVLSVHPRTLSGLPVTED 180
           HDSTTVEPSRLKEASPSLSDELRELEEYRKTHTFSSFEDAIHYVLSVHPRTLSGLPVTED
Sbjct: 121 HDSTTVEPSRLKEASPSLSDELRELEEYRKTHTFSSFEDAIHYVLSVHPRTLSGLPVTED 180

Query: 181 DHHDGEAFELTTPAQSVPVQVPTSEASVDVVQNGNKWMGEEVMTAFEKYVEERDYLKGIE 240
           DHHDGEAFELTTPAQSVPVQVPTSEASVDVVQNGNKWMGEEVMTAFEKYVEERDYLKGIE
Sbjct: 181 DHHDGEAFELTTPAQSVPVQVPTSEASVDVVQNGNKWMGEEVMTAFEKYVEERDYLKGIE 240

Query: 241 YKLDELCHQCLNVKNYNHIFHHFNFSVKTKTPGSTDWTSELYFAEVKTMFRQKVYFCWPL 300
           YKLDELCHQCLNVKNYNHIFHHFNFSVKTKTPGSTDWTSELYFAEVKTMFRQKVYFCWPL
Sbjct: 241 YKLDELCHQCLNVKNYNHIFHHFNFSVKTKTPGSTDWTSELYFAEVKTMFRQKVYFCWPL 300

Query: 301 EPNENGMKIFSYVTY 315
           EPNENGMKIFSYVTY
Sbjct: 301 EPNENGMKIFSYVTY 315



>Os11g0648200 
          Length = 359

 Score =  153 bits (386), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 151/314 (48%), Gaps = 73/314 (23%)

Query: 65  RHQLRGAQPSTSQKP-----------RHAEAGSKTHVRQSVLYSERKRQPRHERG----- 108
           RH+   A PS    P            H  AG+K  VRQSVLYS+R +Q + +RG     
Sbjct: 10  RHRAAPANPSPESPPLLESVDRRRRLGHGVAGNKPRVRQSVLYSDRPKQSQGKRGQPFAI 69

Query: 109 -----------------------GTQP----------------PTLLTASEHDSTTVEPS 129
                                    QP                PT    S+  S+ +   
Sbjct: 70  YTSMIFTRHDLFRVDKDVSEVSSSEQPNDSVSALYYSTDRLNKPTYDAGSKQGSSKIGED 129

Query: 130 RLKEASPSLSDELRELEEY-RKTHTFSSFEDAIHYVLSVHPRTLSGL-----------PV 177
           + ++ S  + + LR+L+EY  K H  SS +DA + VL+    TL+ L           P 
Sbjct: 130 KTRDDSDDVEECLRKLKEYYSKGHIHSSIDDACNEVLAYEHATLTALALEWGMEPPEDPF 189

Query: 178 TEDDHHDGEAFELTTPA---QSVPV-QVPTSEASVD-VVQNGNKWMGEEVMTAFEKYVEE 232
            + +    +  EL   A   Q++ + ++P  E S++ +  NG KWMGEEVM AF+ Y+E 
Sbjct: 190 RQQNSSVDDQEELHQQALSQQNLQIHRLPRHEVSLEEIADNGKKWMGEEVMVAFKNYIEG 249

Query: 233 RDYLKGIEYKLDELCHQCLNVKNYNHIFHHFNFSVKTKTPGSTDWTSELYFAEVKTMFRQ 292
           +  L G EY+L EL HQC NV+NY   FHH+NF+VK K   S DW   +YFAEVK +FR+
Sbjct: 250 KPDLAGHEYRL-ELQHQCFNVENYYENFHHYNFNVKMKKYDSDDWNETIYFAEVKMIFRR 308

Query: 293 KVYFCWPLEPNENG 306
           K YFC PLE  ENG
Sbjct: 309 KYYFCCPLEAPENG 322



>Os10g0540300 Conserved hypothetical protein
          Length = 260

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 4/97 (4%)

Query: 210 VVQNGNKWMGEEVMTAFEKYVEERDYLKGIEYKLDELCHQCLNVKNYNHIFHHFNFSVKT 269
            ++ G +WM  EV+ AF  +         +EY+L+++ HQCL   +    +HH+NF +K+
Sbjct: 134 TIERGLEWMRAEVVEAFSTH----SGANVVEYELEDISHQCLIFDDCAKSYHHYNFIMKS 189

Query: 270 KTPGSTDWTSELYFAEVKTMFRQKVYFCWPLEPNENG 306
           K P S    S L+FAEVK +  +K YFC PL+P+++G
Sbjct: 190 KCPDSHLEGSCLFFAEVKVVDGEKHYFCCPLQPDDDG 226



>Os10g0540900 Conserved hypothetical protein
          Length = 375

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 12/103 (11%)

Query: 212 QNGNKWMGEEVMTAFEKYVEERDYLKGIEYKLDELCHQCLNVKNYNHIFHHFNFSVKTKT 271
           + G +WM EEV+ AFE Y         ++Y+L++L  QCL   +    +HH+NF++K+K 
Sbjct: 243 EKGIEWMREEVIEAFETYSN----ANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKC 298

Query: 272 PGST--------DWTSELYFAEVKTMFRQKVYFCWPLEPNENG 306
           P S            S  YFAEVK M  +K YFC PLE  +NG
Sbjct: 299 PNSDLESSTNVESCISRHYFAEVKLMDGEKHYFCCPLESFDNG 341




 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 23/110 (20%)

Query: 216 KWMGEEVMTAFEKYVEERDYLKGIEYKLDELCHQCLNVKNYNHIFHHFNFSVKTKTPGST 275
           KWM +EV+ AFE Y E       ++Y+L++L  QCL   +    +HH+NF++K+K P S 
Sbjct: 92  KWMRKEVIEAFETYSE----ANVVDYELEDLSRQCLIFDDCGQPYHHYNFTMKSKRPDSD 147

Query: 276 -------------------DWTSELYFAEVKTMFRQKVYFCWPLEPNENG 306
                                 S  YFAEVK M  +K YFC PLE  +NG
Sbjct: 148 LESSTNCPDSDLESSTNLESCISRHYFAEVKLMDGKKHYFCCPLESFDNG 197



>Os12g0148600 Hypothetical protein
          Length = 208

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 221 EVMTAFEKYVEERDYLKGIEYKLDELCHQCLNVKNYNHIFHHFNFSVKTKTPGSTDWTSE 280
           E   AF  Y  E+D  + I+YK  E+ H C        I+HH+NF+V+ K      W   
Sbjct: 79  EAFVAFRNYFVEKDVFEEIDYKFGEILHHCSRTVGIRKIYHHYNFTVEMKNDKDC-WIPR 137

Query: 281 LYFAEVKTMFRQKVYFCWPLEPNENG 306
           +YFAEVK  +  K  FC PLE  ++G
Sbjct: 138 VYFAEVKMKYGFKYRFCAPLEATDDG 163



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,424,082
Number of extensions: 451628
Number of successful extensions: 1447
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 6
Length of query: 315
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 214
Effective length of database: 11,762,187
Effective search space: 2517108018
Effective search space used: 2517108018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)