BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0614500 Os11g0614500|AK067827
(78 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0614500 Similar to Patatin-like protein 3 128 1e-30
Os11g0614400 Similar to Patatin-like protein 1 113 3e-26
Os08g0477100 Similar to Latex allergen 67 3e-12
Os03g0393900 Similar to S.tuberosum patatin (Fragment) 62 6e-11
>Os11g0614500 Similar to Patatin-like protein 3
Length = 78
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/63 (100%), Positives = 63/63 (100%)
Query: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF
Sbjct: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
Query: 61 AKK 63
AKK
Sbjct: 61 AKK 63
>Os11g0614400 Similar to Patatin-like protein 1
Length = 417
Score = 113 bits (282), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/63 (90%), Positives = 59/63 (93%)
Query: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
DDSL GHTSSVDIAT+ENMEALI IGKDLL K VARVNIDTGV+EPVDGEGTNEEALARF
Sbjct: 340 DDSLEGHTSSVDIATKENMEALIKIGKDLLTKRVARVNIDTGVYEPVDGEGTNEEALARF 399
Query: 61 AKK 63
AKK
Sbjct: 400 AKK 402
>Os08g0477100 Similar to Latex allergen
Length = 431
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 43/62 (69%)
Query: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
DD L G T+SVD++T EN+ L+ +GK LLKK +VN++TG +EP GTNEE L F
Sbjct: 353 DDELTGDTASVDVSTPENLNRLVDVGKALLKKRACKVNLETGKNEPDMSRGTNEEELENF 412
Query: 61 AK 62
AK
Sbjct: 413 AK 414
>Os03g0393900 Similar to S.tuberosum patatin (Fragment)
Length = 432
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 46/63 (73%)
Query: 1 DDSLVGHTSSVDIATEENMEALIGIGKDLLKKPVARVNIDTGVHEPVDGEGTNEEALARF 60
D++L G ++VD AT +NM AL+GIG+ +L + V+RVN++TG + V G G+N +AL F
Sbjct: 340 DNTLHGDAATVDAATRDNMRALVGIGERMLAQRVSRVNVETGRYVEVPGAGSNADALRGF 399
Query: 61 AKK 63
A++
Sbjct: 400 ARQ 402
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.131 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,039,379
Number of extensions: 66366
Number of successful extensions: 101
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 6
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)