BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0604600 Os11g0604600|AK102376
(325 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0604600 RINGv domain containing protein 540 e-154
Os08g0384900 RINGv domain containing protein 196 2e-50
Os01g0610700 RINGv domain containing protein 167 9e-42
Os02g0132300 Similar to Erythrocyte membrane protein PFEMP3... 129 4e-30
>Os11g0604600 RINGv domain containing protein
Length = 325
Score = 540 bits (1392), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/325 (83%), Positives = 271/325 (83%)
Query: 1 MGEQPARGXXXXXXXXXXXXXXXXXXXXXAGAGDQFQCRICLETDGRDFIAPCKCKGTSK 60
MGEQPARG AGAGDQFQCRICLETDGRDFIAPCKCKGTSK
Sbjct: 1 MGEQPARGAASSASESSPLIPPPSEIDIEAGAGDQFQCRICLETDGRDFIAPCKCKGTSK 60
Query: 61 YVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRVHVHTDRKWRTLKFRFFVTRDILFIFAL 120
YVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRVHVHTDRKWRTLKFRFFVTRDILFIFAL
Sbjct: 61 YVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRVHVHTDRKWRTLKFRFFVTRDILFIFAL 120
Query: 121 VQFVISALAYLVHFIDGLQNYWLRTAWAFDNEVSFYYICXXXXXXXXXXXSGCFITCYDR 180
VQFVISALAYLVHFIDGLQNYWLRTAWAFDNEVSFYYIC SGCFITCYDR
Sbjct: 121 VQFVISALAYLVHFIDGLQNYWLRTAWAFDNEVSFYYICGALLFFALLGLSGCFITCYDR 180
Query: 181 RVRNDLAQPCRELCLCCCQPGMCADCHLPGTLCMWTDCTTCFXXXXXXXXXXXXXXXXXX 240
RVRNDLAQPCRELCLCCCQPGMCADCHLPGTLCMWTDCTTCF
Sbjct: 181 RVRNDLAQPCRELCLCCCQPGMCADCHLPGTLCMWTDCTTCFEGCATTAGECGGCLGGAG 240
Query: 241 XXXXPLLFIMGVIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVD 300
PLLFIMGVIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVD
Sbjct: 241 EAGLPLLFIMGVIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVD 300
Query: 301 GERADWCPPPLPSEHVQQLKSLGLL 325
GERADWCPPPLPSEHVQQLKSLGLL
Sbjct: 301 GERADWCPPPLPSEHVQQLKSLGLL 325
>Os08g0384900 RINGv domain containing protein
Length = 314
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 154/298 (51%), Gaps = 51/298 (17%)
Query: 38 CRICLETD---GRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRVH 94
CRICLETD G + I+PC CKGT ++VHR CLDHWR+VKEGFAFSHCTTCKA ++LRV
Sbjct: 58 CRICLETDSELGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVE 117
Query: 95 VHTDRKWRTLKFRFFVTRDILFIFALVQFVISALAYLVHFID-------GLQNYWLRTAW 147
D WR +KFR FV RD++ +F VQ I+ + + +F+D + W R +
Sbjct: 118 TWEDNSWRKMKFRIFVARDVILVFLAVQLTIAMIGAISYFLDRDGSFRNSFSDGWDR--F 175
Query: 148 AFDNEVSFYYICXXXXXXXXXXXSGCFITCYDRRVRNDLAQPCRELCLCCCQPGMCADCH 207
+ + FYY G + C ND PC C CC DC
Sbjct: 176 LSKHPIPFYYCIGVVVFFVLLGFFGLILHCSS---FNDNQDPCLAGCRNCCYGWGVLDC- 231
Query: 208 LPGTLCMWTDCTTCFXXXXXXXXXXXXXXXXXXXXXXPLLFIMGVIVLGLFTVIGIFYSV 267
LP +L CF + V+ + +F ++GI Y
Sbjct: 232 LPASL------EACFA--------------------------LVVVFVVVFAILGIAYGF 259
Query: 268 LVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGERADWCPPPLPSEHVQQLKSLGLL 325
L ATM QRIWQRHYHIL KR LTKEYVVED+ G + PP L EH ++LK L LL
Sbjct: 260 LAATMAVQRIWQRHYHILTKRELTKEYVVEDLHG---SYTPPKLDPEHEERLKMLKLL 314
>Os01g0610700 RINGv domain containing protein
Length = 309
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 143/296 (48%), Gaps = 49/296 (16%)
Query: 38 CRICLETD---GRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRVH 94
CRICLE++ G + I+PC CKGT ++VHR CLDHWR+VKEG AFSHCTTCKA ++LRV
Sbjct: 55 CRICLESETEPGDELISPCMCKGTQQFVHRYCLDHWRSVKEGTAFSHCTTCKAQFHLRVE 114
Query: 95 VHTDRKWRTLKFRFFVTRDILFIFALVQFVISALAYLVHFI--DGLQNYWLRTAWAF--- 149
D R + FR FV RD+ +F VQ VI+A+ + + + DG W
Sbjct: 115 CLEDNLCRKMMFRLFVARDVFLVFLAVQTVIAAIGGMAYLLDKDGQFRNSFSDGWEHILS 174
Query: 150 DNEVSFYYICXXXXXXXXXXXSGCFITCYDRRVRNDLAQPCRELCLCCCQPGMCADCHLP 209
++ V FYY G + C + PC C C C+
Sbjct: 175 NHPVPFYYCVGVVVFFVMVGFIGLIVQCSSFNTND----PCLAGCRNC--------CYGW 222
Query: 210 GTLCMWTDCTTCFXXXXXXXXXXXXXXXXXXXXXXPLLFIMGVIVLGLFTVIGIFYSVLV 269
G L C + VI + +F ++G+ Y
Sbjct: 223 GILDFPASIEACLA--------------------------LAVIFVIVFAILGVAYGFFA 256
Query: 270 ATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGERADWCPPPLPSEHVQQLKSLGLL 325
AT+ QRI QRHYHIL KR LTKEYVVED+ R + PP + E Q+L++L L+
Sbjct: 257 ATVAVQRILQRHYHILTKRELTKEYVVEDL---RGCYTPPKMDPEQEQRLRTLQLM 309
>Os02g0132300 Similar to Erythrocyte membrane protein PFEMP3 (Fragment)
Length = 272
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 37 QCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRVHVH 96
QCRICL+ +G D IAPC CKGT KYVHR CLD+WR+ KEGFAFSHCT C+A + LR +V
Sbjct: 84 QCRICLDNEGDDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAAFLLRANVP 143
Query: 97 TDRKWRTLKFRFFVTRDILFIFALVQFVISALAYLVHFIDGLQNYWLRTAWAFDNEVSFY 156
DR W LKF+ V RD IF +VQ V++ L LV+ G + LR + ++ +
Sbjct: 144 PDRWWLRLKFQLLVVRDHTLIFFIVQLVVALLGMLVYRFYGDE---LREMFGYEEHPYAF 200
Query: 157 Y 157
Y
Sbjct: 201 Y 201
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 258 FTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGERADWCPPPLPSEHVQ 317
++G+ Y +A + GQRI +RHYH+LAK+ LTKEY+VED++G P L HV
Sbjct: 208 IVLVGLLYGFFIAIICGQRITERHYHVLAKQELTKEYIVEDLEGTDG---VPDLDPNHVT 264
Query: 318 QLKSLGL 324
+L+ LGL
Sbjct: 265 ELRILGL 271
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.333 0.145 0.513
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,005,336
Number of extensions: 359158
Number of successful extensions: 1102
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1097
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 156 (64.7 bits)