Os11g0604600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RINGv domain containing protein.
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Os11g0604600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RINGv domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.76 | 0.181 | 12 | -0.198 | 0.19 | 0.439 | 0.187 | -0.291 | -0.0694 | 5.1 | 24.02 | 10 | -- | -- |
| 15.11 | 0.181 | 12 | -0.201 | 0.183 | 0.482 | 0.226 | -- | -0.0685 | 6.43 | 23.45 | 9 | -- | -- |
| 14.83 | 0.179 | 12 | -0.196 | 0.189 | 0.455 | -- | -0.265 | -0.0699 | 5.57 | 23.64 | 9 | -- | -- |
| 15.18 | 0.181 | 12 | -0.187 | 0.188 | 0.447 | -- | -- | -0.0692 | 5.44 | 23.6 | 9 | -- | -- |
| 15.71 | 0.185 | 12 | -0.179 | -- | 0.514 | -- | -0.205 | -0.0327 | -- | 25.4 | 125 | -- | -- |
| 18.79 | 0.203 | 12 | -0.205 | 0.5 | -- | -0.0631 | -- | -0.0752 | 1.47 | -- | -- | -- | -- |
| 18.81 | 0.203 | 12 | -0.203 | 0.5 | -- | -- | -- | -0.0749 | 1.47 | -- | -- | -- | -- |
| 15.83 | 0.185 | 12 | -0.17 | -- | 0.511 | -- | -- | -0.0419 | -- | 23.13 | 149 | -- | -- |
| 16.1 | 0.187 | 12 | -- | 0.187 | 0.454 | -- | -- | -0.0465 | 5.59 | 23.65 | 10 | -- | -- |
| 34.16 | 0.273 | 12 | -0.183 | -- | -- | -- | -- | -0.0642 | -- | -- | -- | -- | -- |
| 19.9 | 0.209 | 12 | -- | 0.497 | -- | -- | -- | -0.0523 | 1.46 | -- | -- | -- | -- |
| 16.56 | 0.19 | 12 | -- | -- | 0.515 | -- | -- | -0.0233 | -- | 22.99 | 159 | -- | -- |
| 35.04 | 0.276 | 12 | -- | -- | -- | -- | -- | -0.0439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.12 | radiation | 30 | 270 | < th | dose dependent | rect. | 24 | 16 |
| 17 | 13.52 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 17 |
| 57 | 14.03 | radiation | 40 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 64 | 14.07 | radiation | 20 | 10 | < th | dose dependent | sin | 1 | NA |
| 66 | 14.08 | radiation | 30 | 270 | < th | dose independent | rect. | 11 | 19 |
| 82 | 14.18 | radiation | 20 | 270 | < th | dose dependent | sin | 6 | NA |
| 88 | 14.20 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 23 |
| 95 | 14.22 | radiation | 30 | 270 | < th | dose independent | rect. | 11 | 7 |
| 100 | 14.23 | radiation | 20 | 90 | < th | dose independent | rect. | 24 | 23 |
| 104 | 14.25 | radiation | 20 | 10 | < th | dose independent | rect. | 24 | 23 |
| 125 | 14.32 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 128 | 14.32 | radiation | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 133 | 14.34 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 140 | 14.35 | radiation | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 151 | 14.38 | radiation | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 209 | 14.49 | radiation | 20 | 10 | < th | dose independent | rect. | 2 | 21 |
| 216 | 14.50 | radiation | 20 | 10 | < th | dose independent | rect. | 2 | 16 |
| 230 | 14.53 | radiation | 10 | 30 | < th | dose independent | sin | 0 | NA |
| 236 | 14.56 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 10 |
| 285 | 14.62 | radiation | 30 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 295 | 14.65 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 21 |
| 324 | 14.68 | radiation | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 358 | 14.75 | radiation | 10 | 270 | > th | dose independent | sin | 6 | NA |
| 406 | 14.80 | radiation | 20 | 10 | < th | dose independent | rect. | 2 | 14 |
| 420 | 14.81 | radiation | 10 | 270 | < th | dose independent | sin | 6 | NA |
| 462 | 14.86 | radiation | 10 | 10 | > th | dose independent | rect. | 8 | 7 |
| 469 | 14.86 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 495 | 14.89 | radiation | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 496 | 14.90 | radiation | 10 | 90 | > th | dose independent | sin | 2 | NA |
| 512 | 14.91 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 523 | 14.92 | radiation | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 538 | 14.94 | radiation | 10 | 10 | > th | dose independent | rect. | 6 | 9 |
| 557 | 14.95 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 17 |
| 558 | 14.95 | radiation | 20 | 10 | < th | dose independent | rect. | 9 | 23 |
| 559 | 14.95 | radiation | 1 | 270 | > th | dose dependent | sin | 8 | NA |
| 579 | 14.96 | radiation | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 582 | 14.97 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 6 |
| 611 | 14.98 | radiation | 10 | 10 | > th | dose independent | sin | 1 | NA |
| 624 | 14.99 | wind | 1 | 270 | > th | dose independent | rect. | 7 | 17 |
| 639 | 15.00 | wind | 1 | 30 | > th | dose independent | rect. | 23 | 14 |
| 656 | 15.01 | radiation | 40 | 90 | < th | dose independent | rect. | 12 | 10 |
| 670 | 15.02 | radiation | 1 | 90 | > th | dose dependent | sin | 4 | NA |
| 788 | 15.09 | humidity | 70 | 90 | > th | dose independent | rect. | 2 | 16 |
| 818 | 15.10 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 823 | 15.11 | radiation | 30 | 10 | < th | dose independent | rect. | 12 | 11 |