BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0604600 Os11g0604600|AK102376
(325 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22120.2 | chr2:9394026-9396979 FORWARD LENGTH=364 454 e-128
AT1G11020.1 | chr1:3676968-3678350 FORWARD LENGTH=322 145 3e-35
AT1G50440.1 | chr1:18686099-18687646 FORWARD LENGTH=251 130 1e-30
>AT2G22120.2 | chr2:9394026-9396979 FORWARD LENGTH=364
Length = 363
Score = 454 bits (1169), Expect = e-128, Method: Compositional matrix adjust.
Identities = 218/298 (73%), Positives = 236/298 (79%), Gaps = 2/298 (0%)
Query: 30 AGAGDQFQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFSHCTTCKAPY 89
G G+Q QCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRA+KEGFAF+HCTTCKAPY
Sbjct: 27 GGPGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPY 86
Query: 90 YLRVHVHTDRKWRTLKFRFFVTRDILFIFALVQFVISALAYLVHFIDGLQNYWLRTAWAF 149
YLRVH DRKWRTLKFRFFVTRDIL IF VQ VI+ALAY+V+FID Q WLR W F
Sbjct: 87 YLRVHSAGDRKWRTLKFRFFVTRDILSIFLAVQLVIAALAYMVYFIDSYQQSWLRHIWGF 146
Query: 150 DNEVSFYYICXXXXXXXXXXXSGCFITCYDRRVRNDLAQPCRELCLCCCQPGMCADCHLP 209
D+EV+FYY+C SGC ITCYDRRVRNDLAQPCRELCLCCCQPG+C DCHLP
Sbjct: 147 DSEVTFYYMCGALLFFALLGLSGCVITCYDRRVRNDLAQPCRELCLCCCQPGICTDCHLP 206
Query: 210 GTLCMWTDCTTCFXXXXXXXXXXXXXXXXXXXXXXPLLFIMGVIVLGLFTVIGIFYSVLV 269
GT+CMW DCT C PLLFI +++LGLFTVIGIFYSVLV
Sbjct: 207 GTICMWADCTACTEGCASAVSECGGCLGGAGEAGLPLLFITALVILGLFTVIGIFYSVLV 266
Query: 270 ATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGER--ADWCPPPLPSEHVQQLKSLGLL 325
ATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGE ++W PP LP+EHVQQLK+LGLL
Sbjct: 267 ATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWSPPALPTEHVQQLKTLGLL 324
>AT1G11020.1 | chr1:3676968-3678350 FORWARD LENGTH=322
Length = 321
Score = 145 bits (365), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 145/301 (48%), Gaps = 55/301 (18%)
Query: 38 CRICLETD----GRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFSHCTTCKAPYYLRV 93
CRICLE D G + I+PC CKGT ++VHR CLDHWR+VKEGFAFSHCTTCKA ++LRV
Sbjct: 63 CRICLEDDSELLGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRV 122
Query: 94 HVHTDRK-W-RTLKFRFFVTRDILFIFALVQFVISALAYLVHFIDGLQNYWLRTAWAFD- 150
D W R KFR FV RD+L +F VQ VI+ +A + +D ++ R ++ D
Sbjct: 123 EPFEDNNSWRRKAKFRLFVARDVLLVFLAVQTVIAVMAGFAYMMD--KDGEFRNSFNDDW 180
Query: 151 ------NEVSFYYICXXXXXXXXXXXSGCFITCYDRRVRNDLAQPCRELCLCCCQPGMCA 204
+ + FYY G + C + P C CC
Sbjct: 181 DRILSKHPIPFYYCIGVISFFVLTGFLGIILHCSALNGND----PRMAGCQNCCYGWGVL 236
Query: 205 DCHLPGTLCMWTDCTTCFXXXXXXXXXXXXXXXXXXXXXXPLLFIMGVIVLGLFTVIGIF 264
DC P ++ CF ++F++ +LGL G
Sbjct: 237 DC-FPASM------EACFALV--------------------VVFVVIFAILGL--AYGFL 267
Query: 265 YSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGERADWCPPPLPSEHVQQLKSLGL 324
+ + + QR HYHIL KR LTKEY+VED+ G + PP L +EH +LK L L
Sbjct: 268 AATMAIQRIWQR----HYHILTKRELTKEYIVEDLHGS---YTPPKLDAEHEGRLKMLKL 320
Query: 325 L 325
L
Sbjct: 321 L 321
>AT1G50440.1 | chr1:18686099-18687646 FORWARD LENGTH=251
Length = 250
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Query: 32 AGDQFQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAVKEGFAFSHCTTCKAPYYL 91
+GDQ QCRICL+ G D IAPC CKGT K+VHR CLD+WR+ KEGFAFSHCT C+A + L
Sbjct: 58 SGDQPQCRICLDVGGEDLIAPCNCKGTQKHVHRSCLDNWRSTKEGFAFSHCTECRAFFKL 117
Query: 92 RVHVHTDRKWRTLKFRFFVTRDILFIFALVQFVISALAYLVHFIDGLQNYWLRTAWAFDN 151
R +V DR W L+F+ V RD FIF VQ +++ L LV+ G + LR + ++
Sbjct: 118 RANVPADRWWLRLRFQLLVARDHAFIFISVQMIVAFLGLLVYKFYGEE---LREMFGYEE 174
Query: 152 EVSFYYICXXXXXXXXXXXSGCFIT 176
+Y G FI
Sbjct: 175 HPYGFYTLAVLAIVLVGLLYGFFIA 199
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 259 TVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGERADWCPPPLPSEHVQQ 318
++G+ Y +A + GQ+I +RHYH+LAK+ LTKEY+VED D + P L HV +
Sbjct: 188 VLVGLLYGFFIAIICGQKINERHYHVLAKQELTKEYIVEDRDCKNV----PELDQSHVME 243
Query: 319 LKSLGL 324
LK LGL
Sbjct: 244 LKMLGL 249
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.333 0.145 0.513
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,248,229
Number of extensions: 225539
Number of successful extensions: 724
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 721
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,392,385
Effective search space: 1896679010
Effective search space used: 1896679010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 112 (47.8 bits)