Os08g0384900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RINGv domain containing protein.
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Os08g0384900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RINGv domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.38 | 0.151 | 11.6 | 0.0574 | 0.219 | -0.338 | 0.00897 | -0.661 | 0.0189 | 13 | 11.16 | 123 | -- | -- |
| 10.77 | 0.153 | 11.6 | 0.0565 | 0.189 | -0.279 | -0.278 | -- | 0.0172 | 12.8 | 13.09 | 154 | -- | -- |
| 10.38 | 0.15 | 11.6 | 0.057 | 0.216 | -0.338 | -- | -0.661 | 0.0194 | 13 | 11.92 | 122 | -- | -- |
| 11.07 | 0.155 | 11.6 | 0.0491 | 0.207 | -0.287 | -- | -- | 0.0174 | 13.2 | 10 | 155 | -- | -- |
| 11.6 | 0.159 | 11.6 | 0.0322 | -- | -0.209 | -- | -0.923 | 0.00756 | -- | 34.66 | 122 | -- | -- |
| 11.99 | 0.162 | 11.6 | 0.0551 | 0.0657 | -- | -0.292 | -- | 0.00221 | 11.5 | -- | -- | -- | -- |
| 12.34 | 0.165 | 11.6 | 0.0439 | 0.0693 | -- | -- | -- | 0.00152 | 12.5 | -- | -- | -- | -- |
| 12.27 | 0.163 | 11.6 | 0.0404 | -- | -0.133 | -- | -- | 0.00791 | -- | 32.84 | 213 | -- | -- |
| 11.14 | 0.155 | 11.6 | -- | 0.205 | -0.285 | -- | -- | 0.0124 | 13.1 | 10 | 154 | -- | -- |
| 12.64 | 0.166 | 11.6 | 0.0414 | -- | -- | -- | -- | 0.000343 | -- | -- | -- | -- | -- |
| 12.39 | 0.165 | 11.6 | -- | 0.0686 | -- | -- | -- | -0.00336 | 12.5 | -- | -- | -- | -- |
| 12.3 | 0.163 | 11.6 | -- | -- | -0.139 | -- | -- | 0.00306 | -- | 33.07 | 213 | -- | -- |
| 12.69 | 0.166 | 11.6 | -- | -- | -- | -- | -- | -0.00426 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 7.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 33 | 8.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 44 | 8.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 109 | 8.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 158 | 8.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 169 | 8.99 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 15 |
| 203 | 9.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 205 | 9.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 288 | 9.23 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 300 | 9.25 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 412 | 9.38 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 418 | 9.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 467 | 9.43 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 5 |
| 477 | 9.44 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 8 |
| 484 | 9.45 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 511 | 9.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 7 |
| 531 | 9.49 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 559 | 9.52 | temperature | 15 | 270 | > th | dose independent | rect. | 22 | 16 |
| 586 | 9.55 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 16 |
| 611 | 9.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 643 | 9.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 684 | 9.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 9 |
| 687 | 9.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 733 | 9.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 740 | 9.70 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 18 |
| 744 | 9.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 751 | 9.71 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 16 |
| 772 | 9.73 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 9 |
| 785 | 9.74 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 786 | 9.74 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 5 |
| 787 | 9.74 | radiation | 10 | 270 | > th | dose independent | rect. | 9 | 5 |
| 813 | 9.76 | wind | 7 | 270 | < th | dose independent | rect. | 22 | 16 |
| 821 | 9.76 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 845 | 9.78 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 848 | 9.79 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 850 | 9.79 | temperature | 15 | 270 | > th | dose independent | rect. | 9 | 6 |
| 865 | 9.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 901 | 9.81 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 905 | 9.82 | wind | 7 | 270 | < th | dose independent | rect. | 9 | 5 |
| 930 | 9.83 | temperature | 30 | 10 | < th | dose independent | rect. | 5 | 7 |
| 933 | 9.83 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 19 |
| 937 | 9.83 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 7 |
| 958 | 9.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 986 | 9.85 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 20 |