BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0544500 Os11g0544500|AK071982
(347 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0544500 Protein of unknown function UPF0016 family pro... 534 e-152
Os08g0528500 Protein of unknown function UPF0016 family pro... 113 2e-25
Os11g0472500 Protein of unknown function UPF0016 family pro... 112 4e-25
Os08g0433100 Protein of unknown function UPF0016 family pro... 86 3e-17
>Os11g0544500 Protein of unknown function UPF0016 family protein
Length = 347
Score = 534 bits (1375), Expect = e-152, Method: Compositional matrix adjust.
Identities = 274/325 (84%), Positives = 274/325 (84%)
Query: 1 MATAISVGVAVPAASRRREDGAGPPLLLRRRCLVEGQVRCRLPWLRPIRHNVRVQTSNVN 60
MATAISVGVAVPAASRRREDGAGPPLLLRRRCLVEGQVRCRLPWLRPIRHNVRVQTSNVN
Sbjct: 1 MATAISVGVAVPAASRRREDGAGPPLLLRRRCLVEGQVRCRLPWLRPIRHNVRVQTSNVN 60
Query: 61 VXXXXXXXXXXXXXXXXLDSSATRDSNKPTKPPSGSRYPQSIXXXXXXXXXXXXFIVFFK 120
V LDSSATRDSNKPTKPPSGSRYPQSI FIVFFK
Sbjct: 61 VGAGSYEGGEAGSHGEHLDSSATRDSNKPTKPPSGSRYPQSIAAVLLLCALASAFIVFFK 120
Query: 121 GQPSAVVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTI 180
GQPSAVVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTI
Sbjct: 121 GQPSAVVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTI 180
Query: 181 VSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNANGNLQXXXXXX 240
VSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNANGNLQ
Sbjct: 181 VSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNANGNLQGNSESG 240
Query: 241 XXXXXXXXXXXXXXXXXTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGA 300
TSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGA
Sbjct: 241 ELAEAEELVKEKVAKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGA 300
Query: 301 IAGHLVATFLAIVGGAFLANYLSEK 325
IAGHLVATFLAIVGGAFLANYLSEK
Sbjct: 301 IAGHLVATFLAIVGGAFLANYLSEK 325
>Os08g0528500 Protein of unknown function UPF0016 family protein
Length = 282
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 106/190 (55%), Gaps = 6/190 (3%)
Query: 135 FTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPA 194
F A+ ++I VSEIGD+TF IAAL+AM++ ++ VL G+++AL +MTI+S +GRI ++ +
Sbjct: 75 FFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLIS 134
Query: 195 QFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNANGNLQXXXXXXXXXXXXXXXXXXXX 254
+ T AA L AFFG + + AW+ D+ +
Sbjct: 135 RKHT-----NSAATVLYAFFGLRLLYIAWR-SDSKASQKKEIEEVEEKLEAGQGKSTFRR 188
Query: 255 XXXTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIVG 314
+ +SF L F AEWGDRS +ATIAL ++ GVA GA GH + T A+VG
Sbjct: 189 IFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTICTSFAVVG 248
Query: 315 GAFLANYLSE 324
G+ LA+ +S+
Sbjct: 249 GSMLASKISQ 258
>Os11g0472500 Protein of unknown function UPF0016 family protein
Length = 279
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 108/190 (56%), Gaps = 8/190 (4%)
Query: 137 AAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQF 196
A+ ++I VSEIGD+TF IAAL+AM++ +++VL G+++AL +MT++S +GRI ++ ++
Sbjct: 74 ASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRK 133
Query: 197 QTTLPIGEYAAIALLAFFGFKSIKDAWQL-PDNANGNLQXXXXXXXXXXXXXXXXXXXXX 255
T AA L FFG + + AW+ P +
Sbjct: 134 HT-----NSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLESGQGKSTLRRFFG 188
Query: 256 XXTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIVGG 315
+P + ++F L F AEWGDRS +ATIAL ++ GVA GA GH V T LA++GG
Sbjct: 189 RFCTP--IFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSLAVIGG 246
Query: 316 AFLANYLSEK 325
+ LA+ +S++
Sbjct: 247 SMLASKISQR 256
>Os08g0433100 Protein of unknown function UPF0016 family protein
Length = 203
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 15/179 (8%)
Query: 134 GFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVP 193
GFT + + +SEIGDKTFF AA+LAM+Y R LVL G + +L++MT +SV +G + ++
Sbjct: 8 GFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVAPNLI 67
Query: 194 A----QFQTTLPIGEYAAIALLAFFGFKSIKDA-------WQLPDNANGNLQXXXXXXXX 242
+ TTL + ++L GFK D+ +L N N
Sbjct: 68 SRKWTHHVTTLLFFVFGILSLWE--GFKEDGDSEELAEVEAELDANFKSNKAESKSKSKA 125
Query: 243 XXXXXXXXXXXXXXXTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAI 301
SP+ + K+FS+ FF EWGD+S +ATI L A ++PFGV G +
Sbjct: 126 NDDKKKQQRPFVLQFFSPIFI--KAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGV 182
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,864,330
Number of extensions: 286945
Number of successful extensions: 978
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 6
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)