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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0528500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0016 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.04 (0.0569) R2 : 0.608
β1 : -2.05 (0.204) R2dD : 0.0898 R2D : 0.0305
β2 : 1.26 (0.272) R2dC : 0.0786 R2C : 0.274
β3 : 1.6 (0.22) R2dE : 0.195 R2E : 0.404
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.877 (0.124) R2dN8 : 0.0625 R2N8 : 0.0469
σ : 1.04
deviance : 499.74
__
_____
C
peak time of C : 0.302
E
wheather : radiation
threshold : 10.29
memory length : 33
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.22
open length of G : 23.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
498.1 1.05 5.04 -2.04 1.25 1.61 -0.0333 -0.524 -0.873 0.355 10.62 30 3.08 23.1
498.31 1.04 5.04 -2.06 1.25 1.61 -0.577 -- -0.875 0.302 10.43 33 3.21 23
498.1 1.04 5.04 -2.04 1.25 1.61 -- -0.551 -0.872 0.356 10.64 30 3.08 23.1
499.74 1.04 5.04 -2.05 1.26 1.6 -- -- -0.877 0.302 10.29 33 3.22 23.1
520.09 1.06 4.99 -2.04 -- 2.53 -- -0.581 -0.761 -- 10.34 30 3.2 23.4
554.46 1.1 5.13 -2.03 2.99 -- -0.477 -- -1.12 0.0435 -- -- -- --
555.45 1.1 5.12 -2.01 2.99 -- -- -- -1.12 0.0459 -- -- -- --
521.96 1.06 4.99 -2.06 -- 2.51 -- -- -0.761 -- 10.32 30 3.18 23.4
608.28 1.15 5.01 -- 1.31 1.55 -- -- -0.678 0.156 12.25 30 3.02 23.5
1117.37 1.56 5.06 -1.92 -- -- -- -- -1.08 -- -- -- -- --
662.07 1.2 5.07 -- 2.96 -- -- -- -0.894 0.00764 -- -- -- --
631.32 1.17 4.93 -- -- 2.51 -- -- -0.549 -- 11.7 28 2.92 23.1
1214.36 1.63 5.01 -- -- -- -- -- -0.863 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 498.31 radiation 10.0 30 < th dose dependent rect. 3 23
3 504.21 wind 7.0 90 < th dose independent rect. 14 13
4 505.02 humidity 90.0 10 > th dose dependent rect. 3 19
8 505.40 atmosphere 1000.0 10 > th dose independent rect. 3 23
10 506.30 humidity 90.0 10 > th dose independent rect. 3 19
11 506.32 atmosphere 1000.0 30 > th dose independent rect. 3 20
16 507.67 atmosphere 1000.0 90 > th dose independent rect. 3 16
18 508.83 temperature 25.0 10 < th dose independent rect. 4 2
19 509.08 humidity 90.0 90 > th dose dependent rect. 3 2
37 510.72 precipitation 0.1 90 < th dose independent rect. 14 13
38 510.72 precipitation 0.1 90 < th dose dependent rect. 14 13
53 512.01 humidity 90.0 90 > th dose independent rect. 3 2
54 512.03 humidity 90.0 10 > th dose independent rect. 3 16
59 512.29 radiation 10.0 30 < th dose independent rect. 3 23
68 512.76 radiation 1.0 90 < th dose independent rect. 3 16
69 512.78 humidity 90.0 10 > th dose dependent rect. 3 11
76 512.97 radiation 10.0 30 < th dose dependent rect. 3 20
81 513.26 humidity 90.0 10 > th dose independent rect. 3 5
82 513.29 humidity 90.0 10 > th dose dependent rect. 3 7
86 513.37 temperature 15.0 90 > th dose independent rect. 3 11
89 513.41 atmosphere 1000.0 90 > th dose independent rect. 3 11
92 513.46 atmosphere 1015.0 90 < th dose independent rect. 3 11
93 513.46 temperature 10.0 90 > th dose independent rect. 14 13
94 513.48 humidity 90.0 10 > th dose independent rect. 3 3
104 513.73 temperature 10.0 90 > th dose dependent rect. 6 21
117 514.06 wind 9.0 90 < th dose independent rect. 3 11
124 514.26 humidity 90.0 10 > th dose independent rect. 3 11
134 514.53 radiation 10.0 90 < th dose dependent rect. 3 16
144 515.00 radiation 40.0 90 < th dose independent rect. 14 13
150 515.22 precipitation 0.1 90 < th dose independent rect. 3 11
151 515.22 precipitation 0.1 90 < th dose dependent rect. 3 11
157 515.51 wind 7.0 90 < th dose independent rect. 6 21
159 515.53 radiation 1.0 90 < th dose independent rect. 3 20
169 516.00 atmosphere 1000.0 90 > th dose independent rect. 3 3
190 516.34 wind 9.0 720 < th dose independent rect. 4 23
191 516.39 humidity 60.0 720 > th dose dependent rect. 3 1
214 516.96 precipitation 0.1 90 < th dose independent rect. 6 21
215 516.96 precipitation 0.1 90 < th dose dependent rect. 6 21
216 517.02 atmosphere 1000.0 90 > th dose independent rect. 17 13
218 517.05 wind 9.0 90 < th dose dependent rect. 14 13
219 517.09 temperature 25.0 10 < th dose independent rect. 3 17
225 517.16 atmosphere 1000.0 270 > th dose independent rect. 24 22
231 517.23 temperature 25.0 10 < th dose independent rect. 3 19
260 517.80 radiation 10.0 90 < th dose dependent rect. 3 7
279 517.93 atmosphere 995.0 90 > th dose dependent rect. 3 3
282 517.97 humidity 50.0 10 > th dose dependent rect. 17 14
317 518.41 radiation 20.0 90 < th dose dependent rect. 16 15
328 518.56 atmosphere 1000.0 270 > th dose independent rect. 1 19
342 518.67 atmosphere 1010.0 30 < th dose independent rect. 3 4
354 518.77 atmosphere 1000.0 720 > th dose independent rect. 3 1
359 518.81 radiation 10.0 90 < th dose dependent rect. 3 4
361 518.85 temperature 25.0 270 < th dose independent rect. 1 4
363 518.91 humidity 50.0 90 > th dose dependent rect. 3 10
378 519.13 radiation 1.0 90 < th dose independent rect. 3 5
381 519.14 radiation 30.0 90 < th dose dependent rect. 3 3
387 519.17 wind 9.0 30 < th dose dependent rect. 3 11
395 519.22 wind 9.0 90 < th dose independent rect. 3 3
396 519.22 temperature 10.0 90 > th dose independent rect. 3 3
399 519.22 humidity 50.0 90 > th dose independent rect. 3 3
405 519.22 radiation 20.0 90 < th dose independent rect. 3 3
409 519.22 temperature 10.0 90 > th dose independent rect. 6 21
421 519.31 wind 9.0 90 < th dose dependent rect. 6 21
425 519.37 wind 9.0 720 < th dose independent rect. 15 1
446 519.49 radiation 10.0 90 < th dose dependent rect. 3 11
485 519.89 wind 9.0 90 < th dose dependent rect. 3 3
509 520.07 precipitation 0.1 90 < th dose independent rect. 3 3
510 520.07 precipitation 0.1 90 < th dose dependent rect. 3 3
514 520.10 atmosphere 1000.0 10 > th dose independent rect. 16 15
519 520.12 wind 3.0 30 < th dose dependent rect. 3 4
538 520.38 radiation 10.0 90 < th dose independent rect. 16 14
549 520.43 humidity 90.0 270 > th dose independent rect. 1 4
551 520.48 atmosphere 995.0 90 > th dose dependent rect. 3 16
559 520.53 atmosphere 995.0 30 > th dose dependent rect. 3 20
590 520.77 wind 7.0 270 < th dose independent rect. 5 11
600 520.87 radiation 1.0 90 > th dose independent rect. 6 11
626 521.11 humidity 90.0 10 > th dose dependent sin 0 NA
630 521.14 humidity 80.0 720 > th dose independent rect. 3 1
642 521.22 humidity 50.0 90 > th dose dependent rect. 3 16
665 521.27 wind 5.0 30 < th dose dependent rect. 3 20
673 521.36 humidity 50.0 90 > th dose independent rect. 17 13
693 521.46 temperature 10.0 30 > th dose dependent rect. 23 4
698 521.49 temperature 10.0 90 > th dose dependent rect. 6 11
719 521.67 radiation 40.0 30 < th dose independent rect. 7 20
737 521.77 precipitation 0.1 90 < th dose independent rect. 6 11
738 521.77 precipitation 0.1 90 < th dose dependent rect. 6 11
767 521.97 wind 5.0 90 < th dose independent rect. 23 4
786 522.00 wind 7.0 30 < th dose dependent rect. 23 4
798 522.06 temperature 30.0 90 < th dose independent rect. 3 11
805 522.09 wind 7.0 90 < th dose independent rect. 19 8
807 522.09 humidity 50.0 90 > th dose independent rect. 3 16
827 522.20 temperature 10.0 270 > th dose dependent rect. 23 1
831 522.21 temperature 10.0 90 > th dose dependent rect. 3 3
853 522.30 temperature 10.0 720 > th dose independent rect. 15 1
855 522.30 atmosphere 1015.0 720 < th dose independent rect. 15 1
856 522.30 temperature 10.0 720 > th dose independent rect. 16 23
858 522.31 humidity 90.0 10 > th dose dependent rect. 2 1
876 522.33 atmosphere 1000.0 270 > th dose independent rect. 14 15
879 522.34 precipitation 0.1 720 < th dose independent rect. 15 1
887 522.34 precipitation 0.1 720 < th dose dependent rect. 15 1
897 522.41 temperature 30.0 720 > th dose dependent rect. 18 1
919 522.43 radiation 10.0 30 < th dose dependent rect. 16 23
922 522.45 temperature 25.0 10 < th dose independent rect. 3 12
928 522.49 precipitation 0.1 90 < th dose independent rect. 19 8
931 522.49 precipitation 0.1 90 < th dose dependent rect. 19 8
939 522.57 atmosphere 1015.0 10 < th dose dependent rect. 2 1
941 522.59 temperature 30.0 90 < th dose dependent rect. 3 2
958 522.70 temperature 10.0 90 > th dose independent rect. 6 11
959 522.70 atmosphere 1015.0 90 < th dose independent rect. 6 11
960 522.70 temperature 10.0 90 > th dose independent rect. 17 13
971 522.72 atmosphere 995.0 720 > th dose independent rect. 17 3
990 522.81 radiation 1.0 720 < th dose dependent rect. 2 16
991 522.82 wind 9.0 720 < th dose independent rect. 3 1
992 522.82 temperature 10.0 720 > th dose independent rect. 3 1
993 522.82 temperature 30.0 720 < th dose independent rect. 3 1
994 522.82 humidity 50.0 720 > th dose independent rect. 3 1
998 522.82 radiation 1.0 720 < th dose independent rect. 3 1