BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0528500 Os08g0528500|AK111028
(282 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0528500 Protein of unknown function UPF0016 family pro... 459 e-130
Os11g0472500 Protein of unknown function UPF0016 family pro... 335 2e-92
Os08g0433100 Protein of unknown function UPF0016 family pro... 130 9e-31
Os11g0544500 Protein of unknown function UPF0016 family pro... 123 2e-28
>Os08g0528500 Protein of unknown function UPF0016 family protein
Length = 282
Score = 459 bits (1182), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/282 (84%), Positives = 238/282 (84%)
Query: 1 MARRVSTTRXXXXXXXXXXXXXXXXXGDQEDPRGGGDNGTARLDRRTKMFLHAARASDGG 60
MARRVSTTR GDQEDPRGGGDNGTARLDRRTKMFLHAARASDGG
Sbjct: 1 MARRVSTTRLLLLLLLVAAAAAAAAAGDQEDPRGGGDNGTARLDRRTKMFLHAARASDGG 60
Query: 61 ATGMEKAGLGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTI 120
ATGMEKAGLGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTI
Sbjct: 61 ATGMEKAGLGLFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTI 120
Query: 121 LSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQXXXXXXXXXXXXAG 180
LSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQ AG
Sbjct: 121 LSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAG 180
Query: 181 QGKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTI 240
QGKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTI
Sbjct: 181 QGKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTI 240
Query: 241 CTSFAVVGGSMLASKISQGTVATIXXXXXXXXXXXXXXXPPL 282
CTSFAVVGGSMLASKISQGTVATI PPL
Sbjct: 241 CTSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSYFYPPL 282
>Os11g0472500 Protein of unknown function UPF0016 family protein
Length = 279
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/245 (71%), Positives = 188/245 (76%), Gaps = 6/245 (2%)
Query: 43 LDRRTKMFLHAARAS-----DGGATGMEKAGLGLFDAFFASLSMILVSEIGDETFIIAAL 97
L RR FLH + D G +++ G GLFDA FASLSMILVSEIGDETFIIAAL
Sbjct: 36 LGRRAGGFLHGLKKEAVVEGDHG-VALDEVGPGLFDALFASLSMILVSEIGDETFIIAAL 94
Query: 98 MAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIA 157
MAMRHPKS VLSGALSAL VMT+LSTGLGRIVPNLISRKHTNSAATVLY FFGLRLLYIA
Sbjct: 95 MAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIA 154
Query: 158 WRSDSKASQXXXXXXXXXXXXAGQGKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIA 217
W+SD K SQ +GQGKST RR F RFCTPIFLE+F+LTFLAEWGDRSQIA
Sbjct: 155 WKSDPKGSQKKEMEEVEEKLESGQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIA 214
Query: 218 TIALATHKNAVGVAVGATLGHTICTSFAVVGGSMLASKISQGTVATIXXXXXXXXXXXXX 277
TIALATHKNA+GVAVGA+LGHT+CTS AV+GGSMLASKISQ TVATI
Sbjct: 215 TIALATHKNAIGVAVGASLGHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSY 274
Query: 278 XXPPL 282
PPL
Sbjct: 275 FYPPL 279
>Os08g0433100 Protein of unknown function UPF0016 family protein
Length = 203
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 13/179 (7%)
Query: 71 LFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVP 130
L F SL+M ++SEIGD+TF AA++AMR+P+ VL+G L++L VMT LS LG + P
Sbjct: 5 LLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVAP 64
Query: 131 NLISRKHTNSAATVLYAFFGLRLLYIAWRSD------------SKASQXXXXXXXXXXXX 178
NLISRK T+ T+L+ FG+ L+ ++ D A+
Sbjct: 65 NLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSEELAEVEAELDANFKSNKAESKSKSK 124
Query: 179 AGQGKSTFRRIFS-RFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATL 236
A K +R F +F +PIF+++F +TF EWGD+SQIATI LA +N GV +G L
Sbjct: 125 ANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGVL 183
>Os11g0544500 Protein of unknown function UPF0016 family protein
Length = 347
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 114/197 (57%), Gaps = 8/197 (4%)
Query: 75 FFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLIS 134
F A+ ++I VSEIGD+TF IAAL+AM++ ++ VL G+++AL +MTI+S +GRI ++ +
Sbjct: 135 FTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPA 194
Query: 135 RKHT-----NSAATVLYAFFGLRLLYIAWRSDSKASQXXXXXXXXXXXXAGQGKSTFRRI 189
+ T AA L AFFG + + AW+ A+ + + ++
Sbjct: 195 QFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNANGNLQGNSESGELAEAE-ELVKEKV 253
Query: 190 FSRFCTP--IFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTICTSFAVV 247
+ +P + +SF L F AEWGDRS +ATIAL ++ GVA GA GH + T A+V
Sbjct: 254 AKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIV 313
Query: 248 GGSMLASKISQGTVATI 264
GG+ LA+ +S+ V I
Sbjct: 314 GGAFLANYLSEKLVGLI 330
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,099,175
Number of extensions: 242722
Number of successful extensions: 671
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 4
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)