Os11g0544500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0016 family protein.
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Os11g0544500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0016 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.93 | 0.293 | 11.6 | -0.337 | 0.688 | 0.803 | 0.504 | 1.21 | -0.565 | 21.7 | 0.0002166 | 271 | -- | -- |
| 41.21 | 0.299 | 11.6 | -0.355 | 0.681 | 0.772 | 0.0869 | -- | -0.57 | 21.5 | -1.543 | 275 | -- | -- |
| 39.66 | 0.293 | 11.6 | -0.345 | 0.679 | 0.797 | -- | 0.893 | -0.56 | 21.6 | 0.4803 | 275 | -- | -- |
| 41.24 | 0.299 | 11.6 | -0.361 | 0.684 | 0.786 | -- | -- | -0.571 | 21.6 | -3.766 | 275 | -- | -- |
| 43.55 | 0.307 | 11.6 | -0.348 | -- | 0.915 | -- | 1.36 | -0.585 | -- | 0.002183 | 824 | -- | -- |
| 47.5 | 0.323 | 11.6 | -0.319 | 0.726 | -- | 0.649 | -- | -0.517 | 18.7 | -- | -- | -- | -- |
| 48.55 | 0.326 | 11.6 | -0.33 | 0.728 | -- | -- | -- | -0.515 | 18.8 | -- | -- | -- | -- |
| 43.36 | 0.307 | 11.6 | -0.409 | -- | 0.95 | -- | -- | -0.633 | -- | -4.177 | 841 | -- | -- |
| 44.66 | 0.311 | 11.6 | -- | 0.679 | 0.754 | -- | -- | -0.529 | 21.4 | -4.661 | 274 | -- | -- |
| 76.24 | 0.408 | 11.6 | -0.346 | -- | -- | -- | -- | -0.529 | -- | -- | -- | -- | -- |
| 51.42 | 0.335 | 11.6 | -- | 0.732 | -- | -- | -- | -0.478 | 18.8 | -- | -- | -- | -- |
| 47.73 | 0.322 | 11.6 | -- | -- | 0.93 | -- | -- | -0.585 | -- | -8.519 | 834 | -- | -- |
| 79.4 | 0.416 | 11.6 | -- | -- | -- | -- | -- | -0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 9 |
| 9 | 38.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 19 |
| 18 | 38.24 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 32 | 38.44 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 39 | 38.58 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 69 | 38.77 | radiation | 1 | 270 | > th | dose dependent | sin | 2 | NA |
| 70 | 38.77 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 72 | 38.78 | temperature | 10 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 76 | 38.79 | radiation | 1 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 88 | 38.84 | radiation | 1 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 104 | 38.85 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 106 | 38.85 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 127 | 38.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 128 | 38.91 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 159 | 38.95 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 335 | 39.15 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 12 |
| 379 | 39.19 | temperature | 10 | 14400 | > th | dose dependent | sin | 3 | NA |
| 468 | 39.27 | temperature | 30 | 14400 | < th | dose dependent | sin | 3 | NA |
| 514 | 39.29 | radiation | 40 | 270 | < th | dose dependent | sin | 2 | NA |
| 571 | 39.32 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 598 | 39.32 | temperature | 10 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 636 | 39.34 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 637 | 39.34 | wind | 3 | 14400 | < th | dose independent | rect. | 12 | 3 |
| 639 | 39.34 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 12 |
| 649 | 39.34 | temperature | 30 | 14400 | < th | dose dependent | rect. | 4 | 17 |
| 661 | 39.34 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 746 | 39.37 | wind | 5 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 773 | 39.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 784 | 39.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 800 | 39.38 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 802 | 39.38 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 841 | 39.38 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 23 |
| 862 | 39.39 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 18 |
| 894 | 39.40 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 943 | 39.41 | temperature | 10 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 947 | 39.41 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 998 | 39.41 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 22 |