Os11g0472500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0016 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os11g0472500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function UPF0016 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.75 | 0.192 | 12.1 | -0.933 | 0.245 | 0.434 | 0.425 | -2.55 | -0.00539 | 21.6 | 26 | 913 | -- | -- |
| 17.72 | 0.198 | 12 | -0.403 | 0.341 | -0.281 | 0.149 | -- | 0.113 | 20 | 26 | 913 | -- | -- |
| 17.23 | 0.193 | 12.1 | -0.908 | 0.257 | 0.424 | -- | -2.26 | 0.0154 | 20.9 | 26.46 | 950 | -- | -- |
| 17.78 | 0.198 | 12 | -0.406 | 0.343 | -0.291 | -- | -- | 0.114 | 19.8 | 26 | 913 | -- | -- |
| 20.14 | 0.209 | 12.1 | -0.967 | -- | 0.591 | -- | -2.6 | -0.0139 | -- | 25.96 | 853 | -- | -- |
| 18.86 | 0.204 | 12 | -0.439 | 0.33 | -- | 0.246 | -- | 0.101 | 21.2 | -- | -- | -- | -- |
| 19.06 | 0.204 | 12 | -0.447 | 0.332 | -- | -- | -- | 0.102 | 21 | -- | -- | -- | -- |
| 21.64 | 0.217 | 12 | -0.538 | -- | 0.366 | -- | -- | 0.0701 | -- | 24.8 | 817 | -- | -- |
| 21.97 | 0.219 | 12 | -- | 0.357 | -0.388 | -- | -- | 0.162 | 19.4 | 26 | 913 | -- | -- |
| 25.38 | 0.235 | 12 | -0.447 | -- | -- | -- | -- | 0.0996 | -- | -- | -- | -- | -- |
| 24.33 | 0.231 | 12 | -- | 0.333 | -- | -- | -- | 0.151 | 20.9 | -- | -- | -- | -- |
| 28.58 | 0.25 | 12 | -- | -- | -0.302 | -- | -- | 0.155 | -- | 26 | 913 | -- | -- |
| 30.64 | 0.258 | 12 | -- | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.67 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 1 |
| 3 | 14.77 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 9 |
| 6 | 14.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 8 | 14.84 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 13 |
| 19 | 14.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 13 |
| 32 | 14.99 | temperature | 20 | 90 | > th | dose dependent | sin | 14 | NA |
| 37 | 15.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 52 | 15.11 | temperature | 25 | 270 | < th | dose independent | sin | 15 | NA |
| 58 | 15.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 64 | 15.16 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 9 |
| 70 | 15.17 | temperature | 30 | 90 | < th | dose dependent | sin | 13 | NA |
| 76 | 15.19 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 80 | 15.19 | temperature | 25 | 10 | < th | dose dependent | sin | 13 | NA |
| 94 | 15.23 | temperature | 25 | 270 | > th | dose independent | sin | 16 | NA |
| 96 | 15.23 | temperature | 20 | 10 | > th | dose dependent | sin | 13 | NA |
| 115 | 15.26 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 118 | 15.27 | temperature | 10 | 10 | > th | dose dependent | sin | 13 | NA |
| 123 | 15.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 10 |
| 126 | 15.27 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 142 | 15.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 150 | 15.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 210 | 15.40 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 10 |
| 218 | 15.41 | temperature | 25 | 30 | > th | dose independent | rect. | 4 | 10 |
| 250 | 15.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 11 |
| 275 | 15.47 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 11 |
| 301 | 15.50 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 6 |
| 371 | 15.57 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 8 |
| 398 | 15.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 420 | 15.61 | temperature | 25 | 30 | > th | dose independent | sin | 2 | NA |
| 443 | 15.62 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 484 | 15.64 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 16 |
| 486 | 15.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 508 | 15.66 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 543 | 15.69 | temperature | 25 | 10 | < th | dose independent | rect. | 4 | 9 |
| 547 | 15.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 614 | 15.74 | temperature | 25 | 10 | > th | dose dependent | sin | 4 | NA |
| 651 | 15.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 678 | 15.78 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 700 | 15.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 704 | 15.80 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 724 | 15.81 | temperature | 25 | 30 | < th | dose independent | sin | 2 | NA |
| 730 | 15.81 | temperature | 25 | 10 | < th | dose independent | rect. | 4 | 14 |
| 864 | 15.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 958 | 15.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 973 | 15.94 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 6 |