BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0472500 Os11g0472500|AK073686
(279 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G36290.1 | chr5:14302977-14304972 FORWARD LENGTH=294 365 e-101
AT1G25520.1 | chr1:8962324-8964173 FORWARD LENGTH=231 172 2e-43
AT1G68650.1 | chr1:25775825-25777683 FORWARD LENGTH=229 169 2e-42
AT4G13590.1 | chr4:7901369-7903792 REVERSE LENGTH=360 141 4e-34
AT1G64150.1 | chr1:23809047-23812579 REVERSE LENGTH=371 99 2e-21
>AT5G36290.1 | chr5:14302977-14304972 FORWARD LENGTH=294
Length = 293
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/266 (71%), Positives = 212/266 (79%), Gaps = 7/266 (2%)
Query: 21 AVAEDGE--STGGSKVSLGRRAGGFLHGLKKEAVVEG----DHGVALDEVGPGLFDALFA 74
+V E+ E + GS LGRR + + VV+ + LD P +FDALF+
Sbjct: 28 SVVENNERQESEGSGKELGRRGMVGTERIGVDTVVDNIGALGLNLDLDATAPSVFDALFS 87
Query: 75 SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134
S SMILV+EIGDETFIIAALMAMRHPK+ VLSGALSAL+VMT+LSTGLGRIVPNLISRKH
Sbjct: 88 SFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGRIVPNLISRKH 147
Query: 135 TNSAATVLYLFFGLRLLYIAWKS-DPKGSQXXXXXXXXXXXXSGQGKSTLRRFFGRFCTP 193
TNSAATVLY FFGLRLLYIAW+S D K +Q SGQGK+ RR F RFCTP
Sbjct: 148 TNSAATVLYAFFGLRLLYIAWRSTDSKSNQKKEMEEVEEKLESGQGKTPFRRLFSRFCTP 207
Query: 194 IFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSLAVIGGSMLASKI 253
IFLE+FILTFLAEWGDRSQIATIALATHKNAIGVA+GAS+GHTVCTSLAV+GGSMLAS+I
Sbjct: 208 IFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGASIGHTVCTSLAVVGGSMLASRI 267
Query: 254 SQRTVATIGGVLFLGFSVSSYFYPPL 279
SQRTVAT+GG+LFLGFSVSSYFYPPL
Sbjct: 268 SQRTVATVGGLLFLGFSVSSYFYPPL 293
>AT1G25520.1 | chr1:8962324-8964173 FORWARD LENGTH=231
Length = 230
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 128/214 (59%), Gaps = 14/214 (6%)
Query: 75 SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134
SL+M VSEIGD+TF AA++AMR+P+ +VL+G LSAL VMT+LS LG PNLISRK
Sbjct: 11 SLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAPNLISRKW 70
Query: 135 TNSAATVLYLFFGLRLLYIAWKSDPKGS--------------QXXXXXXXXXXXXSGQGK 180
T+ T+L+ FGL L+ +K GS + + K
Sbjct: 71 THHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPKDSSKREDENK 130
Query: 181 STLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTS 240
R F +F +PIFL+AF + F EWGD+SQ+ATI LA +N GV +G + +CT+
Sbjct: 131 KQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGGVVAQFLCTT 190
Query: 241 LAVIGGSMLASKISQRTVATIGGVLFLGFSVSSY 274
AVIGG LAS+IS+R VA GG+LF+ F + SY
Sbjct: 191 AAVIGGKSLASQISERIVALSGGMLFIIFGIQSY 224
>AT1G68650.1 | chr1:25775825-25777683 FORWARD LENGTH=229
Length = 228
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 129/219 (58%), Gaps = 20/219 (9%)
Query: 75 SLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKH 134
SL+M +SEIGD+TF AA++AMR+P+ +VL+G LSAL VMT+LS LG PNLISRK
Sbjct: 11 SLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAAPNLISRKW 70
Query: 135 TNSAATVLYLFFGLRLLYIAWK----------------SDPKGSQXXXXXXXXXXXXSGQ 178
T+ T L+ FGL L+ +K SD K + +
Sbjct: 71 THHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDLKKTNDQSKNSKI----EDE 126
Query: 179 GKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVC 238
K R F F +PIFL+AF + F EWGD+SQ+ATI LA +N +GV +G + T+C
Sbjct: 127 QKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGIVAQTLC 186
Query: 239 TSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYP 277
T+ AV+GG LAS+IS+R VA GG+LF+ F + S P
Sbjct: 187 TTAAVLGGKSLASQISERIVALSGGMLFIIFGIQSLLTP 225
>AT4G13590.1 | chr4:7901369-7903792 REVERSE LENGTH=360
Length = 359
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 126/209 (60%), Gaps = 7/209 (3%)
Query: 74 ASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRK 133
A+ S+I VSEIGD+TF IAAL+AM++ K++VL G++ AL +MT+LS +G+I ++ ++
Sbjct: 148 AAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIGKIFQSVPAQF 207
Query: 134 HT-----NSAATVLYLFFGLRLLYIAWKSDPKGSQXXXXXXXXXXXXSGQGKSTLRRFFG 188
T AA L +FFGL+ + AW P ++ S + +
Sbjct: 208 QTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSEAEELVKEKASK 267
Query: 189 RFCTP--IFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSLAVIGG 246
+ P I ++F L F AEWGDRS +AT+AL ++ +GVA GA GH V T LA++GG
Sbjct: 268 KLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGHLVATVLAIMGG 327
Query: 247 SMLASKISQRTVATIGGVLFLGFSVSSYF 275
+ LA+ IS++ V +GG LFL F+ +++F
Sbjct: 328 AFLANYISEKLVGYVGGALFLVFAAATFF 356
>AT1G64150.1 | chr1:23809047-23812579 REVERSE LENGTH=371
Length = 370
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 106/203 (52%), Gaps = 16/203 (7%)
Query: 78 MILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRI---VPNLISRKH 134
+I SE+GD+TF IAAL+A R+ + V G AL +MT++S LGR V ++ +
Sbjct: 165 LIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYVDEVLPFRF 224
Query: 135 -------TNSAATVLYLFFGLRLLYIAWKSDPKGSQXXXXXXXXXXXXSGQGKSTLRRFF 187
+ AA L ++FG+ L A + K + SG G +
Sbjct: 225 GGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEGKADEEQKEAELAVSELSGNGAGIVA--- 281
Query: 188 GRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSLAVIGGS 247
+ F L F+AEWGD+S +TIALA + +GV GA GH T LAV+GGS
Sbjct: 282 ---AANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGAATLLAVLGGS 338
Query: 248 MLASKISQRTVATIGGVLFLGFS 270
+L + +S++ +A +GGVLFL F+
Sbjct: 339 LLGNFLSEKAIAYVGGVLFLVFA 361
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,084,716
Number of extensions: 174777
Number of successful extensions: 417
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 5
Length of query: 279
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 182
Effective length of database: 8,447,217
Effective search space: 1537393494
Effective search space used: 1537393494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)