BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0472500 Os11g0472500|AK073686
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0472500 Protein of unknown function UPF0016 family pro... 510 e-145
Os08g0528500 Protein of unknown function UPF0016 family pro... 368 e-102
Os11g0544500 Protein of unknown function UPF0016 family pro... 136 2e-32
Os08g0433100 Protein of unknown function UPF0016 family pro... 134 5e-32
>Os11g0472500 Protein of unknown function UPF0016 family protein
Length = 279
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/279 (92%), Positives = 259/279 (92%)
Query: 1 MDPNPRXXXXXXXXAFSATVAVAEDGESTGGSKVSLGRRAGGFLHGLKKEAVVEGDHGVA 60
MDPNPR AFSATVAVAEDGESTGGSKVSLGRRAGGFLHGLKKEAVVEGDHGVA
Sbjct: 1 MDPNPRLLILLVLLAFSATVAVAEDGESTGGSKVSLGRRAGGFLHGLKKEAVVEGDHGVA 60
Query: 61 LDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLST 120
LDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLST
Sbjct: 61 LDEVGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLST 120
Query: 121 GLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQXXXXXXXXXXXXSGQGK 180
GLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQ SGQGK
Sbjct: 121 GLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLESGQGK 180
Query: 181 STLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTS 240
STLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTS
Sbjct: 181 STLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTS 240
Query: 241 LAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYPPL 279
LAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYPPL
Sbjct: 241 LAVIGGSMLASKISQRTVATIGGVLFLGFSVSSYFYPPL 279
>Os08g0528500 Protein of unknown function UPF0016 family protein
Length = 282
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/245 (76%), Positives = 203/245 (82%), Gaps = 6/245 (2%)
Query: 36 LGRRAGGFLHGLKKEAVVEGDHG-VALDEVGPGLFDALFASLSMILVSEIGDETFIIAAL 94
L RR FLH + D G +++ G GLFDA FASLSMILVSEIGDETFIIAAL
Sbjct: 43 LDRRTKMFLHAARAS-----DGGATGMEKAGLGLFDAFFASLSMILVSEIGDETFIIAAL 97
Query: 95 MAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRKHTNSAATVLYLFFGLRLLYIA 154
MAMRHPKS VLSGALSAL VMT+LSTGLGRIVPNLISRKHTNSAATVLY FFGLRLLYIA
Sbjct: 98 MAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIA 157
Query: 155 WKSDPKGSQXXXXXXXXXXXXSGQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIA 214
W+SD K SQ +GQGKST RR F RFCTPIFLE+F+LTFLAEWGDRSQIA
Sbjct: 158 WRSDSKASQKKEIEEVEEKLEAGQGKSTFRRIFSRFCTPIFLESFVLTFLAEWGDRSQIA 217
Query: 215 TIALATHKNAIGVAVGASLGHTVCTSLAVIGGSMLASKISQRTVATIGGVLFLGFSVSSY 274
TIALATHKNA+GVAVGA+LGHT+CTS AV+GGSMLASKISQ TVATIGG+LFLGFS+SSY
Sbjct: 218 TIALATHKNAVGVAVGATLGHTICTSFAVVGGSMLASKISQGTVATIGGLLFLGFSLSSY 277
Query: 275 FYPPL 279
FYPPL
Sbjct: 278 FYPPL 282
>Os11g0544500 Protein of unknown function UPF0016 family protein
Length = 347
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 127/209 (60%), Gaps = 8/209 (3%)
Query: 74 ASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLGRIVPNLISRK 133
A+ ++I VSEIGD+TF IAAL+AM++ +++VL G+++AL +MT++S +GRI ++ ++
Sbjct: 137 AAFTLIFVSEIGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQF 196
Query: 134 HT-----NSAATVLYLFFGLRLLYIAWKSDPKGSQXXXXXXXXXXXXSGQGKSTLRRFFG 188
T AA L FFG + + AW+ P + + + +
Sbjct: 197 QTTLPIGEYAAIALLAFFGFKSIKDAWQL-PDNANGNLQGNSESGELAEAEELVKEKVAK 255
Query: 189 RFCTP--IFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVGASLGHTVCTSLAVIGG 246
+ +P + ++F L F AEWGDRS +ATIAL ++ GVA GA GH V T LA++GG
Sbjct: 256 KLTSPLEVLWKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIVGG 315
Query: 247 SMLASKISQRTVATIGGVLFLGFSVSSYF 275
+ LA+ +S++ V IGGVLFL F+V+++F
Sbjct: 316 AFLANYLSEKLVGLIGGVLFLLFAVATFF 344
>Os08g0433100 Protein of unknown function UPF0016 family protein
Length = 203
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 103/183 (56%), Gaps = 13/183 (7%)
Query: 64 VGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLG 123
+ P L SL+M ++SEIGD+TF AA++AMR+P+ +VL+G L++L VMT LS LG
Sbjct: 1 MAPSLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLG 60
Query: 124 RIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGS-------------QXXXXXXX 170
+ PNLISRK T+ T+L+ FG+ L+ +K D +
Sbjct: 61 WVAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSEELAEVEAELDANFKSNKAESK 120
Query: 171 XXXXXSGQGKSTLRRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVG 230
+ K R F +F +PIF++AF +TF EWGD+SQIATI LA +N GV +G
Sbjct: 121 SKSKANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLG 180
Query: 231 ASL 233
L
Sbjct: 181 GVL 183
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,305,666
Number of extensions: 298025
Number of successful extensions: 688
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 686
Number of HSP's successfully gapped: 4
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)