Os08g0433100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0016 family protein.
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Os08g0433100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0016 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.19 | 0.254 | 11 | -0.615 | 1.67 | 0.946 | -0.647 | -1.43 | -0.0933 | 7.63 | 26.32 | 734 | -- | -- |
| 30.98 | 0.259 | 11 | -0.29 | 1.69 | 0.867 | -0.243 | -- | 0.00502 | 7.54 | 26.4 | 690 | -- | -- |
| 30.11 | 0.256 | 11 | -0.523 | 1.67 | 0.934 | -- | -0.972 | -0.0609 | 7.66 | 26.37 | 735 | -- | -- |
| 31.09 | 0.26 | 11 | -0.288 | 1.66 | 0.863 | -- | -- | 0.0113 | 7.61 | 26.3 | 709 | -- | -- |
| 117.05 | 0.504 | 11 | -0.455 | -- | 0.698 | -- | -0.593 | 0.0288 | -- | 26.2 | 2836 | -- | -- |
| 52.75 | 0.341 | 10.9 | -0.00338 | 1.22 | -- | -0.507 | -- | 0.235 | 7.38 | -- | -- | -- | -- |
| 53.44 | 0.342 | 10.9 | -0.0143 | 1.22 | -- | -- | -- | 0.236 | 7.42 | -- | -- | -- | -- |
| 116.78 | 0.503 | 11 | -0.271 | -- | 0.68 | -- | -- | 0.0921 | -- | 23.6 | 4382 | -- | -- |
| 33.13 | 0.268 | 11 | -- | 1.66 | 0.824 | -- | -- | 0.053 | 7.57 | 26.4 | 706 | -- | -- |
| 132.72 | 0.538 | 11 | 0.00522 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 53.45 | 0.342 | 10.9 | -- | 1.22 | -- | -- | -- | 0.238 | 7.42 | -- | -- | -- | -- |
| 118.78 | 0.508 | 11 | -- | -- | 0.595 | -- | -- | 0.0811 | -- | 23.7 | 4365 | -- | -- |
| 132.72 | 0.538 | 11 | -- | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 5 | 30.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 36 | 31.13 | temperature | 25 | 720 | > th | dose dependent | sin | 19 | NA |
| 53 | 31.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 74 | 31.33 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 82 | 31.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 83 | 31.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 96 | 31.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 189 | 32.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 14 |
| 221 | 32.87 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 15 |
| 225 | 32.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 234 | 32.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 247 | 32.99 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 253 | 33.01 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 266 | 33.10 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 330 | 33.37 | temperature | 20 | 10 | > th | dose dependent | sin | 15 | NA |
| 358 | 33.46 | temperature | 30 | 90 | < th | dose dependent | sin | 16 | NA |
| 359 | 33.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 376 | 33.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 392 | 33.58 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 16 |
| 419 | 33.67 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 425 | 33.69 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 15 |
| 488 | 33.82 | temperature | 10 | 90 | > th | dose dependent | sin | 16 | NA |
| 492 | 33.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 551 | 33.94 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 653 | 34.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 789 | 34.29 | temperature | 25 | 720 | < th | dose independent | sin | 21 | NA |
| 969 | 34.48 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |