BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0433100 Os08g0433100|AK066308
         (203 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0433100  Protein of unknown function UPF0016 family pro...   303   4e-83
Os11g0472500  Protein of unknown function UPF0016 family pro...   127   8e-30
Os08g0528500  Protein of unknown function UPF0016 family pro...   122   2e-28

>Os08g0433100 Protein of unknown function UPF0016 family protein
          Length = 203

 Score =  303 bits (777), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 157/203 (77%)

Query: 1   MAPSLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLG 60
           MAPSLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLG
Sbjct: 1   MAPSLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLG 60

Query: 61  WVAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSXXXXXXXXXXDANFXXXXXXXX 120
           WVAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDS          DANF        
Sbjct: 61  WVAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSEELAEVEAELDANFKSNKAESK 120

Query: 121 XXXXXXXXXXXQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLG 180
                      QQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLG
Sbjct: 121 SKSKANDDKKKQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLG 180

Query: 181 GVXXXXXXXXXXXXXXXXXCGPD 203
           GV                 CGPD
Sbjct: 181 GVLYELHLLFPLHFLNGLLCGPD 203



>Os11g0472500 Protein of unknown function UPF0016 family protein
          Length = 279

 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 100/180 (55%), Gaps = 13/180 (7%)

Query: 1   MAPSLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLG 60
           + P L      SL+M ++SEIGD+TF  AA++AMR+P+ +VL+G L++L VMT LS  LG
Sbjct: 64  VGPGLFDALFASLSMILVSEIGDETFIIAALMAMRHPKSIVLSGALSALYVMTVLSTGLG 123

Query: 61  WVAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSXXXXXXXXXXDANFXXXXXXXX 120
            + PNLISRK T+   T+L+  FG+  L+  +K D             +           
Sbjct: 124 RIVPNLISRKHTNSAATVLYLFFGLRLLYIAWKSDPKGSQKKEMEEVEEKLESGQGKSTL 183

Query: 121 XXXXXXXXXXXQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLG 180
                        R F  +F +PIF++AF +TF  EWGD+SQIATI LA  +N  GV +G
Sbjct: 184 -------------RRFFGRFCTPIFLEAFILTFLAEWGDRSQIATIALATHKNAIGVAVG 230



>Os08g0528500 Protein of unknown function UPF0016 family protein
          Length = 282

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 98/176 (55%), Gaps = 13/176 (7%)

Query: 5   LLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVAP 64
           L   F  SL+M ++SEIGD+TF  AA++AMR+P+  VL+G L++L VMT LS  LG + P
Sbjct: 71  LFDAFFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVP 130

Query: 65  NLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSXXXXXXXXXXDANFXXXXXXXXXXXX 124
           NLISRK T+   T+L+  FG+  L+  ++ D  +          +               
Sbjct: 131 NLISRKHTNSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQGKSTF---- 186

Query: 125 XXXXXXXQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLG 180
                    R    +F +PIF+++F +TF  EWGD+SQIATI LA  +N  GV +G
Sbjct: 187 ---------RRIFSRFCTPIFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVG 233



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.141    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,995,479
Number of extensions: 144628
Number of successful extensions: 352
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)