BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0433100 Os08g0433100|AK066308
(203 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G25520.1 | chr1:8962324-8964173 FORWARD LENGTH=231 238 2e-63
AT1G68650.1 | chr1:25775825-25777683 FORWARD LENGTH=229 236 5e-63
AT5G36290.1 | chr5:14302977-14304972 FORWARD LENGTH=294 118 2e-27
AT4G13590.1 | chr4:7901369-7903792 REVERSE LENGTH=360 80 6e-16
AT1G64150.1 | chr1:23809047-23812579 REVERSE LENGTH=371 52 2e-07
>AT1G25520.1 | chr1:8962324-8964173 FORWARD LENGTH=231
Length = 230
Score = 238 bits (606), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/180 (67%), Positives = 135/180 (75%), Gaps = 1/180 (0%)
Query: 4 SLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVA 63
S+L GFTKSLAMT +SEIGDKTFFAAAILAMRYPR+LVLAGCL++L VMT LS +LGW A
Sbjct: 3 SVLQGFTKSLAMTFVSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAA 62
Query: 64 PNLISRKWTHHVTTLLFFVFGILSLWEGFKE-DGDSXXXXXXXXXXDANFXXXXXXXXXX 122
PNLISRKWTHH+TTLLFF FG+ SLW+GFKE G S DA+
Sbjct: 63 PNLISRKWTHHITTLLFFGFGLWSLWDGFKEGGGGSEELAEVEAELDADLKANGKSPKDS 122
Query: 123 XXXXXXXXXQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGV 182
Q R F+ QFFSPIF+KAFSI FFGEWGDKSQ+ATIGLAADENPFGVVLGGV
Sbjct: 123 SKREDENKKQNRAFLTQFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPFGVVLGGV 182
>AT1G68650.1 | chr1:25775825-25777683 FORWARD LENGTH=229
Length = 228
Score = 236 bits (603), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 134/179 (74%), Gaps = 1/179 (0%)
Query: 4 SLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVA 63
SLL GFTKSLAMT LSEIGDKTFFAAAILAMRYPR+LVLAGCL++L VMT LS +LGW A
Sbjct: 3 SLLQGFTKSLAMTFLSEIGDKTFFAAAILAMRYPRRLVLAGCLSALIVMTILSATLGWAA 62
Query: 64 PNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSXXXXXXXXXXDANFXXXXXXXXXXX 123
PNLISRKWTHH+TT LFF FG+ SLW+GFKE G S D++
Sbjct: 63 PNLISRKWTHHITTFLFFGFGLWSLWDGFKEGGGSEELAEVEAELDSDL-KKTNDQSKNS 121
Query: 124 XXXXXXXXQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGV 182
Q+RPF+ FFSPIF+KAFSI FFGEWGDKSQ+ATIGLAADENP GVVLGG+
Sbjct: 122 KIEDEQKKQKRPFLTAFFSPIFLKAFSINFFGEWGDKSQLATIGLAADENPLGVVLGGI 180
>AT5G36290.1 | chr5:14302977-14304972 FORWARD LENGTH=294
Length = 293
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 12/179 (6%)
Query: 2 APSLLGGFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGW 61
APS+ S +M +++EIGD+TF AA++AMR+P+ VL+G L++L VMT LS LG
Sbjct: 78 APSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILSTGLGR 137
Query: 62 VAPNLISRKWTHHVTTLLFFVFGILSLWEGFKEDGDSXXXXXXXXXXDANFXXXXXXXXX 121
+ PNLISRK T+ T+L+ FG+ L+ ++ DS +N
Sbjct: 138 IVPNLISRKHTNSAATVLYAFFGLRLLYIAWRST-DS----------KSNQKKEMEEVEE 186
Query: 122 XXXXXXXXXXQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLG 180
+R F +F +PIF+++F +TF EWGD+SQIATI LA +N GV +G
Sbjct: 187 KLESGQGKTPFRRLFS-RFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIG 244
>AT4G13590.1 | chr4:7901369-7903792 REVERSE LENGTH=360
Length = 359
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 8 GFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVAPNLI 67
GFT + ++ +SEIGDKTFF AA+LAM+Y + LVL G + +L++MT LSV +G + ++
Sbjct: 145 GFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIGKIFQSVP 204
Query: 68 SRKWT-----HHVTTLLFFVFGILSLWEGFKEDGDSXXXXXXXXXXDANFXXXXXXXXXX 122
++ T + L FG+ S+ +D +
Sbjct: 205 AQFQTTLPIGEYAAIALLMFFGLKSI-----KDAWDLPPVEAKNGEETGIELGEYSEAEE 259
Query: 123 XXXXXXXXXQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGLAADENPFGVVLGGV 182
P I K+FS+ FF EWGD+S +AT+ L A ++P GV G +
Sbjct: 260 LVKEKASKKLTNPL------EILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAI 313
>AT1G64150.1 | chr1:23809047-23812579 REVERSE LENGTH=371
Length = 370
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 47/190 (24%)
Query: 8 GFTKSLAMTVLSEIGDKTFFAAAILAMRYPRKLVLAGCLTSLTVMTALSVSLGWVAPNLI 67
GF + + SE+GDKTFF AA+LA R V G +L +MT +SV LG
Sbjct: 158 GFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLG------- 210
Query: 68 SRKWTHHVTTLLFF-------------------VFGILSLWEGFKEDGDSXXXXXXXXXX 108
+ H+V +L F FG+ +L + ++G +
Sbjct: 211 --RTFHYVDEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAVSDEGKADEEQKEAELA 268
Query: 109 DANFXXXXXXXXXXXXXXXXXXXQQRPFVLQFFSPIFIKAFSITFFGEWGDKSQIATIGL 168
+ ++ F+ +F+ EWGDKS +TI L
Sbjct: 269 VSELSGNGAGIVAAANT-----------IISTFALVFV--------AEWGDKSFFSTIAL 309
Query: 169 AADENPFGVV 178
AA +P GV+
Sbjct: 310 AAASSPLGVI 319
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.141 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,187,859
Number of extensions: 92202
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 7
Length of query: 203
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 109
Effective length of database: 8,529,465
Effective search space: 929711685
Effective search space used: 929711685
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)