BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0482100 Os11g0482100|AK058672
(577 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0482100 Similar to Protein transport protein Sec24-lik... 1015 0.0
Os04g0129500 Zinc finger, Sec23/Sec24-type domain containin... 260 2e-69
AK110126 206 3e-53
Os12g0430000 Sec23/Sec24 trunk region domain containing pro... 87 3e-17
Os04g0412900 Sec23/Sec24 trunk region domain containing pro... 79 1e-14
>Os11g0482100 Similar to Protein transport protein Sec24-like CEF
Length = 577
Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/577 (87%), Positives = 502/577 (87%)
Query: 1 NAIQTGXXXXXXXXXXXXXXDLPEGPRTMVGIATFDSAIHFYSLKRAQQQPLMLIVPDVQ 60
NAIQTG DLPEGPRTMVGIATFDSAIHFYSLKRAQQQPLMLIVPDVQ
Sbjct: 1 NAIQTGSTAAACSAISQAISDLPEGPRTMVGIATFDSAIHFYSLKRAQQQPLMLIVPDVQ 60
Query: 61 DVYTPLQKDLILPVSECRENLEQLLESIPSMFENNRVADSAFGAAMKAGFLAMKSTGGKL 120
DVYTPLQKDLILPVSECRENLEQLLESIPSMFENNRVADSAFGAAMKAGFLAMKSTGGKL
Sbjct: 61 DVYTPLQKDLILPVSECRENLEQLLESIPSMFENNRVADSAFGAAMKAGFLAMKSTGGKL 120
Query: 121 LVFQXXXXXXXXXXXXAREAEGRANVSTGDKEPHKLLQPVDKTLKTMALEFAEYQVCVDV 180
LVFQ AREAEGRANVSTGDKEPHKLLQPVDKTLKTMALEFAEYQVCVDV
Sbjct: 121 LVFQSVLPSLGVGSLSAREAEGRANVSTGDKEPHKLLQPVDKTLKTMALEFAEYQVCVDV 180
Query: 181 FLTTQSYVDIASISVVPNTTGGRVYYYYPFSARSDPAKLFNDLRWNISRPQGFEAVMRVR 240
FLTTQSYVDIASISVVPNTTGGRVYYYYPFSARSDPAKLFNDLRWNISRPQGFEAVMRVR
Sbjct: 181 FLTTQSYVDIASISVVPNTTGGRVYYYYPFSARSDPAKLFNDLRWNISRPQGFEAVMRVR 240
Query: 241 CSQGLQVQDYFGNFCKRVPTDIDLPSIDSDKTIMVTFKHDDKLQENSECGFQCALLYTTV 300
CSQGLQVQDYFGNFCKRVPTDIDLPSIDSDKTIMVTFKHDDKLQENSECGFQCALLYTTV
Sbjct: 241 CSQGLQVQDYFGNFCKRVPTDIDLPSIDSDKTIMVTFKHDDKLQENSECGFQCALLYTTV 300
Query: 301 YGQRRIRVMNLSLPCTNMLSNLFRYADLETQFTCFLKQAANGIPTSTLLHLREEVTNTCI 360
YGQRRIRVMNLSLPCTNMLSNLFRYADLETQFTCFLKQAANGIPTSTLLHLREEVTNTCI
Sbjct: 301 YGQRRIRVMNLSLPCTNMLSNLFRYADLETQFTCFLKQAANGIPTSTLLHLREEVTNTCI 360
Query: 361 NILQSYRKYCASVSSSGQXXXXXXXXXXXXXXXXXXXSIGLRNEGRLDDRSYWIXXXXXX 420
NILQSYRKYCASVSSSGQ SIGLRNEGRLDDRSYWI
Sbjct: 361 NILQSYRKYCASVSSSGQLILPEALKLLPLYTLALIKSIGLRNEGRLDDRSYWISLVSSV 420
Query: 421 XXXXXXXXXFPRLIPIHDLTSRGDDESLIPSPLMLNSENIREDGVYLLENGEDGLIYVGN 480
FPRLIPIHDLTSRGDDESLIPSPLMLNSENIREDGVYLLENGEDGLIYVGN
Sbjct: 421 SVLLAVPLVFPRLIPIHDLTSRGDDESLIPSPLMLNSENIREDGVYLLENGEDGLIYVGN 480
Query: 481 VVEPTILEQIFGVSSLAALPSQAVLEQFDNELSRKVNEVINEIXXXXXXXXXXXXXXXGE 540
VVEPTILEQIFGVSSLAALPSQAVLEQFDNELSRKVNEVINEI GE
Sbjct: 481 VVEPTILEQIFGVSSLAALPSQAVLEQFDNELSRKVNEVINEIRRQRCSYLRLRLCRRGE 540
Query: 541 PSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 577
PSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT
Sbjct: 541 PSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 577
>Os04g0129500 Zinc finger, Sec23/Sec24-type domain containing protein
Length = 1031
Score = 260 bits (664), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 181/586 (30%), Positives = 285/586 (48%), Gaps = 18/586 (3%)
Query: 1 NAIQTGXXXXXXXXXXXXXXDLPEGPRTMVGIATFDSAIHFYSLKRAQQQPLMLIVPDVQ 60
+A+++G DLP PRT +G TFDS +HF++ K + QP M++V D+
Sbjct: 452 SAVRSGLLEVVAKTIKSCLDDLPGFPRTQIGFLTFDSTLHFHNFKSSLSQPQMMVVADLD 511
Query: 61 DVYTPLQKDLILPVSECRENLEQLLESIPSMFENNRVADSAFGAAMKAGFLAMKSTGGKL 120
DV+ PL DL++ + + R ++ L+S+P+MF++N +SA G A+KA F+ M GGKL
Sbjct: 512 DVFLPLPDDLLVNLVDSRHVVDSFLDSLPNMFQDNVNVESALGPALKAAFMVMSQIGGKL 571
Query: 121 LVFQXXXXXXXXXXXXAREAEGRANVSTGDKEPHKLLQPVDKTLKTMALEFAEYQVCVDV 180
LVFQ R + RA + DKE H L P D K MA EF + Q+ VD+
Sbjct: 572 LVFQSTLPSLGVGRLRLRGDDVRAYGT--DKE-HSLRVPEDPFYKQMAAEFTKNQIAVDI 628
Query: 181 FLTTQSYVDIASISVVPNTTGGRVYYYYPFSARSDPAKLFNDLRWNISRPQGFEAVMRVR 240
F + Y DIAS+ + TGG+VY+Y F A + KL ++L +++R +E+VMR+R
Sbjct: 629 FSFSDKYCDIASLGSLAKYTGGQVYHYPSFQAVTHGDKLKHELSRDLTRETAWESVMRIR 688
Query: 241 CSQGLQVQDYFGNFCKRVPTDIDLPSIDSDKTIMVTFKHDDKLQENSECGFQCALLYTTV 300
C +G++ Y G+F R + LP++DSDK + ++ L FQ ALLYT+
Sbjct: 689 CGKGVRFTTYHGHFMLRSTDLLALPAVDSDKAFAMQLSLEETLMTTQTVYFQVALLYTSS 748
Query: 301 YGQRRIRVMNLSLPCTNMLSNLFRYADLETQFTCFLKQAANGIPTSTLLHLREEVTNTCI 360
G+RRIRV + P L ++R AD + + A + L +R+++ +
Sbjct: 749 SGERRIRVHTAAAPVVTDLGEMYRQADTGAIVSLLSRIAVENSLSDKLDSVRQQLQLKLV 808
Query: 361 NILQSYRK-YCASVSSSGQXXXXXXXXXXXXXXXXXXXSIGLRN---EGRLDDRSYWIXX 416
L+ YR Y G+ S+ LR + LD+R
Sbjct: 809 RSLKEYRNLYVVQHRIGGRLIYPESLRFLPLYILSICKSLALRGGYADVSLDERCAAGFS 868
Query: 417 XXXXXXXXXXXXXFPRLIPIHDLTSRGDDE---SLIPSPLMLNSENIREDGVYLLENGED 473
+P L + ++ S D SL PL + + + G+YLL++G
Sbjct: 869 MMILPAKKLLNFIYPSLYRVDEVLSMEPDRIGGSLKRLPLTM--QCLDTGGLYLLDDGFT 926
Query: 474 GLIYVGNVVEPTILEQIFGVSSLAALP--SQAVLEQFDNELSRKVNEVINEIXXXXXXXX 531
L+++G ++ P ++ I GV SLA P S+ L + DNE SR +++ +
Sbjct: 927 FLVWLGRMLPPELVNNILGV-SLANFPDLSKVQLRECDNEYSRNFMKILGTLRERDPSYH 985
Query: 532 XX-XXXXXGEPS--GDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQS 574
GE G S L ED+ G SY+++++ +HRQ QS
Sbjct: 986 QLCRVVRQGEQPREGFLLLSNLVEDQMSGTSSYMDWILQIHRQTQS 1031
>AK110126
Length = 905
Score = 206 bits (525), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 156/574 (27%), Positives = 266/574 (46%), Gaps = 34/574 (5%)
Query: 27 RTMVGIATFDSAIHFYSLKR---AQQQPLMLIVPDVQDVYTPLQKDLILPVSECRENLEQ 83
RT +G DS++H++S+ R P ML+V D+ + + P +DL++ ++ECR N+E
Sbjct: 340 RTRLGFMAVDSSLHYFSIPRDGSENNDPKMLVVSDLDEPFLPTPEDLLVNLTECRANIET 399
Query: 84 LLESIPSMFENNRVADSAFGAAMKAGFLAMKSTGGKLLVFQXXXXXXXXXXXXAREAEGR 143
L + MF N + SA G+A++AG + GGK++ RE +
Sbjct: 400 YLTKLQGMFANTQDNGSAMGSALRAGHKLISHVGGKVVCLSASLPNIGHGKLAMREDKKL 459
Query: 144 ANVSTGDKEPHKLLQPVDKTLKTMALEFAEYQVCVDVFLTTQSYVDIASISVVPNTTGGR 203
G + + LLQ + K+ A+E ++ QV +D+FL + Y D AS+S +P TGG+
Sbjct: 460 ----LGTSKENALLQTQNSFYKSFAVECSKTQVSIDMFLFSAQYQDEASLSNLPRYTGGQ 515
Query: 204 VYYYYPFSA--RSDPAKLFNDLRWNISRPQGFEAVMRVRCSQGLQVQDYFGNFCKRVPTD 261
Y+Y ++A D K + +S G EAV+RVR + GL+ ++GNF R
Sbjct: 516 TYFYPAWNAARTEDAIKFATEFSDYLSSEIGLEAVLRVRTTTGLRPSAFYGNFFNRSSDL 575
Query: 262 IDLPSIDSDKTIMVTFKHDDKLQENSECGFQCALLYTTVYGQRRIRVMNLSLPCTNMLSN 321
P++ D+ +V D+ + + C Q +L+TT G+RRIRV+ LS+P T L+
Sbjct: 576 CAFPAMPRDQAYVVEIAIDESVTKAFAC-LQVGVLHTTCNGERRIRVLTLSIPTTQNLAE 634
Query: 322 LFRYADLETQFTCFLKQAANGIPTSTLLHLREEVTNTCINILQSYRKYCASVSSSGQXXX 381
++ AD + F +A +S L R+ V I +LQ+Y+K + G
Sbjct: 635 VYASADQQAITHYFAHKAVERALSSGLDAARDAVQAKIIELLQTYKKELGGGNMGGGGLQ 694
Query: 382 -XXXXXXXXXXXXXXXXSIGLRNEGRL--DDRSYWIXXXXXXXXXXXXXXXFPRLIPIHD 438
++GLR ++ D RS + +PRL +HD
Sbjct: 695 FPANLRGLPMLFLGLMKNLGLRKSAQIPTDLRSAALCLLSTLPLPLLMQYIYPRLYSLHD 754
Query: 439 LTSRGDDESL---------IPSPLMLNSENIREDGVYLLENGEDGLIYVGNVVEPTILEQ 489
+ DD L +P PL L+S N+ G+YLL++G+ +++G P ++
Sbjct: 755 MP---DDAGLPHPETGAIVMPPPLNLSSANLVPYGLYLLDDGQTQFLWLGRDAVPALIAD 811
Query: 490 IFGVSSLAALP-SQAVLEQFDNELSRKVNEVINEIXXXXXXXXXXXXX-------XXGEP 541
+FG L + + D+E++ +V V+ + GEP
Sbjct: 812 VFGTEDKNQLKQGKTSVPVIDSEMNERVRAVVEKSRDHRGKGCGSITVPPLYLIREDGEP 871
Query: 542 SGDFF-RSFLTEDKAPGGLSYVEFLVHVHRQIQS 574
S + ++ L ED+A G+S +F+ + ++ S
Sbjct: 872 SLRLWAQTLLVEDRADQGVSGAQFVGMLREKVIS 905
>Os12g0430000 Sec23/Sec24 trunk region domain containing protein
Length = 64
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/41 (92%), Positives = 40/41 (97%)
Query: 203 RVYYYYPFSARSDPAKLFNDLRWNISRPQGFEAVMRVRCSQ 243
+VY+YYPFSA SDPAKLFNDLRWNISRPQGFEAVMRVRCSQ
Sbjct: 7 QVYHYYPFSALSDPAKLFNDLRWNISRPQGFEAVMRVRCSQ 47
>Os04g0412900 Sec23/Sec24 trunk region domain containing protein
Length = 739
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 96/408 (23%), Positives = 168/408 (41%), Gaps = 69/408 (16%)
Query: 26 PRTMVGIATFDSAIHFYSLKRAQQQPLMLI----VP---------DVQDVYTPLQKDLIL 72
P ++ G+ TF S I Y + Q P+ ++ +P D++DV PL + +
Sbjct: 153 PGSLFGLLTFSSKIGLYDV----QGPIPIVKNAFIPPDSDGTLLVDLEDV-MPL-RSFLA 206
Query: 73 PVSECRENLEQLLESIP--SMFE----NNRVADSA------FGAAMKAGFLAMKSTGGKL 120
PV C++ + + LE+I S +E + V D A FG AM A + + G L
Sbjct: 207 PVDGCKDRIAEALETIKPTSSWEITATASEVQDHALHHARGFGLAMDAVVNYLCTEYGSL 266
Query: 121 L-VFQXXXXXXXXXXXXAREAEGRANVSTGDKE----PHKLLQPVDKTLKTMALEFAEYQ 175
+ + + E R++V + H + +A +
Sbjct: 267 FELARIFTFLSGPPNYGPGQIETRSDVDHNAAKMLGSDHTFISEQTNFYTNLAASAVQAG 326
Query: 176 VCVDVFLTTQSYVDIASISVVPNTTGGRVYYYYPFSARSDPAKLFNDLRWNISRPQGFEA 235
VCVD+F T Y D++S+ V+ +GG +Y Y + +D + L D+ +SRP F
Sbjct: 327 VCVDLFAITNEYTDLSSLKVLSVESGGSLYMY----SSTDESTLPQDIYKMLSRPYAFGC 382
Query: 236 VMRVRCSQGLQVQDYFGNFCKRVPTDIDLPSIDSDKTIMVTFKHDDKLQENSECG----- 290
V+R+R S ++ D +G+F P + + I+ + T+ +D + Q++S+
Sbjct: 383 VLRLRTSSEFKIADSYGHFFPD-PQYMHVQHINCCDS-FATYVYDFEFQKDSQFSRKSSP 440
Query: 291 --FQCALLYTTVYG-------------------QRRIRVMNLSLPCTNMLSNLFRYADLE 329
Q A YTT+ QRR+RV + T + +L+ + D +
Sbjct: 441 PILQIAFKYTTIVQQGDTSDDVSNSVSRSKFTLQRRLRVRTIQYNITANIWDLYDFVDPD 500
Query: 330 TQFTCFLKQAANGIPTSTLLHLREEVTNTCINILQSYRKYCASVSSSG 377
T + Q S +L R + + +N + Y K V S G
Sbjct: 501 VVLTILVHQVILA-SLSDVLEARIWLRDWLVNFIAQYNKAYKVVRSGG 547
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,228,587
Number of extensions: 602090
Number of successful extensions: 1045
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1035
Number of HSP's successfully gapped: 5
Length of query: 577
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 471
Effective length of database: 11,501,117
Effective search space: 5417026107
Effective search space used: 5417026107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)